Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PMQ entry

There are 3 chains in PDB entry 7PMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 0	LYS 457
A	GLY 0	LYS 457
B	MET 1	LEU 410

There are 86 helices in PDB entry 7PMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	3	8	Right-handed 310
Helix 2	AA2	C	11	21	Right-handed alpha
Helix 3	AA3	C	27	39	Right-handed alpha
Helix 4	AA4	C	52	64	Right-handed alpha
Helix 5	AA5	C	80	95	Right-handed alpha
Helix 6	AA6	C	111	119	Right-handed alpha
Helix 7	AA7	C	129	140	Right-handed alpha
Helix 8	AA8	C	154	159	Right-handed alpha
Helix 9	AA9	C	163	172	Right-handed alpha
Helix 10	AB1	C	188	196	Right-handed alpha
Helix 11	AB2	C	227	240	Right-handed alpha
Helix 12	AB3	C	250	265	Right-handed alpha
Helix 13	AB4	C	276	289	Right-handed alpha
Helix 14	AB5	C	299	302	Right-handed 310
Helix 15	AB6	C	321	330	Right-handed alpha
Helix 16	AB7	C	346	348	Right-handed 310
Helix 17	AB8	C	349	361	Right-handed alpha
Helix 18	AB9	C	390	394	Right-handed 310
Helix 19	AC1	C	396	405	Right-handed alpha
Helix 20	AC2	C	411	413	Right-handed 310
Helix 21	AC3	C	431	443	Right-handed alpha
Helix 22	AC4	A	3	8	Right-handed 310
Helix 23	AC5	A	11	21	Right-handed alpha
Helix 24	AC6	A	27	38	Right-handed alpha
Helix 25	AC7	A	52	64	Right-handed alpha
Helix 26	AC8	A	80	95	Right-handed alpha
Helix 27	AC9	A	96	98	Right-handed 310
Helix 28	AD1	A	111	121	Right-handed alpha
Helix 29	AD2	A	129	140	Right-handed alpha
Helix 30	AD3	A	143	147	Right-handed 310
Helix 31	AD4	A	163	172	Right-handed alpha
Helix 32	AD5	A	188	196	Right-handed alpha
Helix 33	AD6	A	197	199	Right-handed 310
Helix 34	AD7	A	227	240	Right-handed alpha
Helix 35	AD8	A	250	264	Right-handed alpha
Helix 36	AD9	A	276	290	Right-handed alpha
Helix 37	AE1	A	299	302	Right-handed 310
Helix 38	AE2	A	321	330	Right-handed alpha
Helix 39	AE3	A	346	348	Right-handed 310
Helix 40	AE4	A	349	361	Right-handed alpha
Helix 41	AE5	A	396	405	Right-handed alpha
Helix 42	AE6	A	411	413	Right-handed 310
Helix 43	AE7	A	433	442	Right-handed alpha
Helix 44	AE8	B	3	7	Right-handed 310
Helix 45	AE9	B	11	21	Right-handed alpha
Helix 46	AF1	B	27	38	Right-handed alpha
Helix 47	AF2	B	52	64	Right-handed alpha
Helix 48	AF3	B	80	95	Right-handed alpha
Helix 49	AF4	B	111	120	Right-handed alpha
Helix 50	AF5	B	129	140	Right-handed alpha
Helix 51	AF6	B	143	147	Right-handed 310
Helix 52	AF7	B	154	159	Right-handed alpha
Helix 53	AF8	B	160	172	Right-handed alpha
Helix 54	AF9	B	188	196	Right-handed alpha
Helix 55	AG1	B	197	199	Right-handed 310
Helix 56	AG2	B	227	240	Right-handed alpha
Helix 57	AG3	B	250	265	Right-handed alpha
Helix 58	AG4	B	276	290	Right-handed alpha
Helix 59	AG5	B	299	302	Right-handed 310
Helix 60	AG6	B	321	330	Right-handed alpha
Helix 61	AG7	B	346	351	Right-handed alpha
Helix 62	AG8	B	351	361	Right-handed alpha
Helix 63	AG9	B	396	406	Right-handed alpha
Helix 64	AH1	B	411	413	Right-handed 310
Helix 65	AH2	B	433	443	Right-handed alpha
Helix 66	AH3	D	11	22	Right-handed alpha
Helix 67	AH4	D	27	38	Right-handed alpha
Helix 68	AH5	D	52	64	Right-handed alpha
Helix 69	AH6	D	80	95	Right-handed alpha
Helix 70	AH7	D	111	120	Right-handed alpha
Helix 71	AH8	D	129	139	Right-handed alpha
Helix 72	AH9	D	143	147	Right-handed 310
Helix 73	AI1	D	154	159	Right-handed alpha
Helix 74	AI2	D	163	173	Right-handed alpha
Helix 75	AI3	D	188	195	Right-handed alpha
Helix 76	AI4	D	196	199	Right-handed 310
Helix 77	AI5	D	227	240	Right-handed alpha
Helix 78	AI6	D	250	264	Right-handed alpha
Helix 79	AI7	D	276	290	Right-handed alpha
Helix 80	AI8	D	299	302	Right-handed 310
Helix 81	AI9	D	321	330	Right-handed alpha
Helix 82	AJ1	D	346	348	Right-handed 310
Helix 83	AJ2	D	349	361	Right-handed alpha
Helix 84	AJ3	D	396	405	Right-handed alpha
Helix 85	AJ4	D	411	413	Right-handed 310
Helix 86	AJ5	D	433	441	Right-handed alpha

There are 14 sheets in PDB entry 7PMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	125	128	parallel
Strand 3	C	74	77	parallel
Strand 4	C	149	153	parallel
Strand 5	C	179	184	parallel
Strand 6	C	43	46	parallel
Strand 7	C	203	206	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	271	first strand
Strand 2	C	294	297	parallel
Strand 3	C	244	247	parallel
Strand 4	C	312	315	parallel
Strand 5	C	339	345	parallel
Strand 6	C	216	222	parallel
Strand 7	C	366	367	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	420	first strand
Strand 2	C	424	430	anti-parallel
Strand 3	C	382	388	anti-parallel
Strand 4	C	453	455	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	125	128	parallel
Strand 3	A	74	77	parallel
Strand 4	A	149	153	parallel
Strand 5	A	179	184	parallel
Strand 6	A	43	46	parallel
Strand 7	A	203	206	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	339	345	parallel
Strand 3	A	312	315	parallel
Strand 4	A	244	247	parallel
Strand 5	A	294	297	parallel
Strand 6	A	268	271	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	420	first strand
Strand 2	A	424	430	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	453	455	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	449	450	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	125	128	parallel
Strand 3	B	74	77	parallel
Strand 4	B	149	153	parallel
Strand 5	B	179	184	parallel
Strand 6	B	43	46	parallel
Strand 7	B	203	206	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	294	297	parallel
Strand 3	B	244	247	parallel
Strand 4	B	312	315	parallel
Strand 5	B	339	345	parallel
Strand 6	B	216	222	parallel
Strand 7	B	366	367	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	420	first strand
Strand 2	B	424	430	anti-parallel
Strand 3	B	382	388	anti-parallel
Strand 4	B	453	455	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	449	450	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	106	first strand
Strand 2	D	125	128	parallel
Strand 3	D	74	77	parallel
Strand 4	D	149	153	parallel
Strand 5	D	179	184	parallel
Strand 6	D	43	46	parallel
Strand 7	D	203	206	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	271	first strand
Strand 2	D	294	297	parallel
Strand 3	D	244	247	parallel
Strand 4	D	312	315	parallel
Strand 5	D	339	345	parallel
Strand 6	D	216	222	parallel
Strand 7	D	366	367	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	420	first strand
Strand 2	D	424	430	anti-parallel
Strand 3	D	382	388	anti-parallel
Strand 4	D	453	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMQ