Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMU entry

There is 1 chain in PDB entry 7PMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7PMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 26Right-handed alpha
Helix 2
AA2
A
37 50Right-handed alpha
Helix 3
AA3
A
53 63Right-handed alpha
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
72 89Right-handed alpha
Helix 6
AA6
A
111 123Right-handed alpha
Helix 7
AA7
A
134 150Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
197 199Right-handed 310
Helix 10
AB1
A
231 233Right-handed 310
Helix 11
AB2
A
247 255Right-handed alpha
Helix 12
AB3
A
256 265Right-handed alpha
Helix 13
AB4
A
287 294Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
306 311Right-handed alpha
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There are 4 sheets in PDB entry 7PMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
365 371anti-parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
223 229anti-parallel
Strand 6
A
200 218anti-parallel
Strand 7
A
190 196anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
377 383anti-parallel
Strand 3
A
365 371anti-parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
223 229anti-parallel
Strand 6
A
200 218anti-parallel
Strand 7
A
268 277anti-parallel
Strand 8
A
358 360parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 129first strand
Strand 2
A
95 105parallel
Strand 3
A
168 177anti-parallel
Strand 4
A
317 328parallel
Strand 5
A
279 286anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
332 334parallel
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