Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMX entry

There are 2 chains in PDB entry 7PMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 12ASP 683
B
 ALA 1PHE 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7PMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 45Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
66 75Right-handed alpha
Helix 5
AA5
A
78 108Right-handed alpha
Helix 6
AA6
A
118 149Right-handed alpha
Helix 7
AA7
A
155 185Right-handed alpha
Helix 8
AA8
A
197 219Right-handed alpha
Helix 9
AA9
A
231 249Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
270 286Right-handed alpha
Helix 12
AB3
A
287 288Right-handed 310
Helix 13
AB4
A
289 291Right-handed 310
Helix 14
AB5
A
292 298Right-handed alpha
Helix 15
AB6
A
298 311Right-handed alpha
Helix 16
AB7
A
321 325Right-handed 310
Helix 17
AB8
A
326 343Right-handed alpha
Helix 18
AB9
A
343 351Right-handed alpha
Helix 19
AC1
A
356 384Right-handed alpha
Helix 20
AC2
A
433 435Right-handed 310
Helix 21
AC3
A
481 485Right-handed 310
Helix 22
AC4
A
580 583Right-handed 310
Helix 23
AC5
A
584 610Right-handed alpha
Helix 24
AC6
A
614 637Right-handed alpha
Helix 25
AC7
A
643 651Right-handed alpha
Helix 26
AC8
A
655 668Right-handed alpha
Helix 27
AC9
A
669 674Right-handed 310
Helix 28
AD1
A
675 680Right-handed alpha
Helix 29
AD2
A
681 683Right-handed 310
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There are 6 sheets in PDB entry 7PMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
428 431anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
459 466parallel
Strand 4
A
469 474anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 418first strand
Strand 2
A
407 411anti-parallel
Strand 3
A
439 441anti-parallel
Strand 4
A
448 449anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
519 521anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
553 560parallel
Strand 4
A
566 574anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 510first strand
Strand 2
A
498 502anti-parallel
Strand 3
A
527 532anti-parallel
Strand 4
A
542 544anti-parallel
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