Analysis of interatomic Contacts of Structural Units in PDB entry:
7PMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PMY entry

There are 2 chains in PDB entry 7PMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 41VAL 697
B
 ALA 1PHE 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 7PMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 46Right-handed alpha
Helix 2
AA2
A
46 66Right-handed alpha
Helix 3
AA3
A
66 74Right-handed alpha
Helix 4
AA4
A
78 95Right-handed alpha
Helix 5
AA5
A
96 108Right-handed alpha
Helix 6
AA6
A
109 132Right-handed alpha
Helix 7
AA7
A
133 137Right-handed 310
Helix 8
AA8
A
138 171Right-handed alpha
Helix 9
AA9
A
176 208Right-handed alpha
Helix 10
AB1
A
216 238Right-handed alpha
Helix 11
AB2
A
239 241Right-handed 310
Helix 12
AB3
A
249 270Right-handed alpha
Helix 13
AB4
A
275 278Right-handed 310
Helix 14
AB5
A
279 285Right-handed alpha
Helix 15
AB6
A
289 304Right-handed alpha
Helix 16
AB7
A
305 308Right-handed 310
Helix 17
AB8
A
309 317Right-handed alpha
Helix 18
AB9
A
318 328Right-handed alpha
Helix 19
AC1
A
341 345Right-handed 310
Helix 20
AC2
A
346 362Right-handed alpha
Helix 21
AC3
A
362 371Right-handed alpha
Helix 22
AC4
A
372 376Right-handed 310
Helix 23
AC5
A
377 405Right-handed alpha
Helix 24
AC6
A
607 610Right-handed 310
Helix 25
AC7
A
611 637Right-handed alpha
Helix 26
AC8
A
641 667Right-handed alpha
Helix 27
AC9
A
670 695Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7PMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
413 420anti-parallel
Strand 3
A
453 456anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
413 420anti-parallel
Strand 3
A
486 494parallel
Strand 4
A
497 505anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
461 470anti-parallel
Strand 4
A
473 482anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
516 521anti-parallel
Strand 3
A
549 550anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
516 521anti-parallel
Strand 3
A
580 588parallel
Strand 4
A
592 601anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 539first strand
Strand 2
A
527 530anti-parallel
Strand 3
A
559 563anti-parallel
Strand 4
A
567 570anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 555first strand
Strand 2
A
574 575anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il