Analysis of interatomic Contacts of Structural Units in PDB entry:
7PN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PN1 entry

There is 1 chain in PDB entry 7PN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 12ASP 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7PN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 48Right-handed alpha
Helix 2
AA2
A
51 77Right-handed alpha
Helix 3
AA3
A
79 108Right-handed alpha
Helix 4
AA4
A
118 139Right-handed alpha
Helix 5
AA5
A
139 150Right-handed alpha
Helix 6
AA6
A
155 185Right-handed alpha
Helix 7
AA7
A
197 219Right-handed alpha
Helix 8
AA8
A
220 223Right-handed 310
Helix 9
AA9
A
231 249Right-handed alpha
Helix 10
AB1
A
261 266Right-handed alpha
Helix 11
AB2
A
270 286Right-handed alpha
Helix 12
AB3
A
289 298Right-handed alpha
Helix 13
AB4
A
300 310Right-handed alpha
Helix 14
AB5
A
321 325Right-handed 310
Helix 15
AB6
A
326 343Right-handed alpha
Helix 16
AB7
A
343 351Right-handed alpha
Helix 17
AB8
A
356 383Right-handed alpha
Helix 18
AB9
A
384 386Right-handed 310
Helix 19
AC1
A
481 485Right-handed 310
Helix 20
AC2
A
580 583Right-handed 310
Helix 21
AC3
A
584 610Right-handed alpha
Helix 22
AC4
A
611 613Right-handed 310
Helix 23
AC5
A
614 637Right-handed alpha
Helix 24
AC6
A
643 654Right-handed alpha
Helix 25
AC7
A
655 668Right-handed alpha
Helix 26
AC8
A
670 674Right-handed 310
Helix 27
AC9
A
675 680Right-handed alpha
Helix 28
AD1
A
681 683Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7PN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
428 431anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
394 401anti-parallel
Strand 3
A
459 466parallel
Strand 4
A
469 474anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 418first strand
Strand 2
A
407 411anti-parallel
Strand 3
A
439 441anti-parallel
Strand 4
A
448 449anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
519 521anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 515first strand
Strand 2
A
486 492anti-parallel
Strand 3
A
553 560parallel
Strand 4
A
566 574anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 510first strand
Strand 2
A
498 502anti-parallel
Strand 3
A
527 531anti-parallel
Strand 4
A
542 544anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il