Analysis of interatomic Contacts of Structural Units in PDB entry:
7POJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7POJ entry

There are 4 chains in PDB entry 7POJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 321ARG 424
B
 ASN 321ARG 424
C
 ASP 80SER 261
D
 ASP 80SER 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7POJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
361 365Right-handed 310
Helix 2
AA2
A
367 380Right-handed alpha
Helix 3
AA3
B
336 339Right-handed 310
Helix 4
AA4
B
361 365Right-handed 310
Helix 5
AA5
B
367 380Right-handed alpha
Helix 6
AA6
C
82 95Right-handed alpha
Helix 7
AA7
C
119 123Right-handed 310
Helix 8
AA8
C
203 214Right-handed alpha
Helix 9
AA9
D
82 95Right-handed alpha
Helix 10
AB1
D
203 214Right-handed alpha
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There are 8 sheets in PDB entry 7POJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 326first strand
Strand 2
A
351 353anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
346 348anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
389 403anti-parallel
Strand 3
A
406 423anti-parallel
Strand 4
D
104 109anti-parallel
Strand 5
D
252 259anti-parallel
Strand 6
D
138 148anti-parallel
Strand 7
D
198 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
351 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 331first strand
Strand 2
B
346 348anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 343first strand
Strand 2
B
389 403anti-parallel
Strand 3
B
406 423anti-parallel
Strand 4
C
104 109anti-parallel
Strand 5
C
252 259anti-parallel
Strand 6
C
138 148anti-parallel
Strand 7
C
198 202anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 132first strand
Strand 2
C
216 224anti-parallel
Strand 3
C
165 170anti-parallel
Strand 4
C
184 188anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 132first strand
Strand 2
D
216 224anti-parallel
Strand 3
D
165 169anti-parallel
Strand 4
D
184 188anti-parallel
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