Analysis of interatomic Contacts of Structural Units in PDB entry:
7PP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PP3 entry

There are 4 chains in PDB entry 7PP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	ASP 409
B	ASN 9	ASP 409
C	SER 8	ASP 409
D	ASN 9	ASP 409

There are 88 helices in PDB entry 7PP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed alpha
Helix 2	AA2	A	20	30	Right-handed alpha
Helix 3	AA3	A	75	77	Right-handed 310
Helix 4	AA4	A	78	91	Right-handed alpha
Helix 5	AA5	A	100	104	Right-handed 310
Helix 6	AA6	A	105	109	Right-handed 310
Helix 7	AA7	A	132	138	Right-handed alpha
Helix 8	AA8	A	145	149	Right-handed 310
Helix 9	AA9	A	151	160	Right-handed alpha
Helix 10	AB1	A	169	178	Right-handed alpha
Helix 11	AB2	A	194	208	Right-handed alpha
Helix 12	AB3	A	210	219	Right-handed alpha
Helix 13	AB4	A	219	224	Right-handed alpha
Helix 14	AB5	A	233	240	Right-handed 310
Helix 15	AB6	A	261	265	Right-handed 310
Helix 16	AB7	A	279	292	Right-handed alpha
Helix 17	AB8	A	303	312	Right-handed alpha
Helix 18	AB9	A	315	319	Right-handed 310
Helix 19	AC1	A	320	325	Right-handed alpha
Helix 20	AC2	A	327	335	Right-handed 310
Helix 21	AC3	A	348	353	Right-handed alpha
Helix 22	AC4	A	394	406	Right-handed alpha
Helix 23	AC5	B	16	20	Right-handed alpha
Helix 24	AC6	B	20	30	Right-handed alpha
Helix 25	AC7	B	75	77	Right-handed 310
Helix 26	AC8	B	78	91	Right-handed alpha
Helix 27	AC9	B	100	104	Right-handed 310
Helix 28	AD1	B	105	109	Right-handed 310
Helix 29	AD2	B	132	138	Right-handed alpha
Helix 30	AD3	B	145	149	Right-handed 310
Helix 31	AD4	B	151	160	Right-handed alpha
Helix 32	AD5	B	169	178	Right-handed alpha
Helix 33	AD6	B	194	208	Right-handed alpha
Helix 34	AD7	B	210	219	Right-handed alpha
Helix 35	AD8	B	219	224	Right-handed alpha
Helix 36	AD9	B	233	240	Right-handed 310
Helix 37	AE1	B	261	265	Right-handed 310
Helix 38	AE2	B	279	292	Right-handed alpha
Helix 39	AE3	B	303	311	Right-handed alpha
Helix 40	AE4	B	315	319	Right-handed 310
Helix 41	AE5	B	320	324	Right-handed 310
Helix 42	AE6	B	327	335	Right-handed 310
Helix 43	AE7	B	348	353	Right-handed alpha
Helix 44	AE8	B	394	406	Right-handed alpha
Helix 45	AE9	C	16	20	Right-handed alpha
Helix 46	AF1	C	20	30	Right-handed alpha
Helix 47	AF2	C	75	77	Right-handed 310
Helix 48	AF3	C	78	91	Right-handed alpha
Helix 49	AF4	C	100	104	Right-handed 310
Helix 50	AF5	C	105	109	Right-handed 310
Helix 51	AF6	C	132	138	Right-handed alpha
Helix 52	AF7	C	145	149	Right-handed 310
Helix 53	AF8	C	151	160	Right-handed alpha
Helix 54	AF9	C	169	178	Right-handed alpha
Helix 55	AG1	C	194	208	Right-handed alpha
Helix 56	AG2	C	210	219	Right-handed alpha
Helix 57	AG3	C	219	224	Right-handed alpha
Helix 58	AG4	C	233	240	Right-handed 310
Helix 59	AG5	C	261	265	Right-handed 310
Helix 60	AG6	C	279	292	Right-handed alpha
Helix 61	AG7	C	303	311	Right-handed alpha
Helix 62	AG8	C	315	319	Right-handed 310
Helix 63	AG9	C	320	325	Right-handed alpha
Helix 64	AH1	C	327	335	Right-handed 310
Helix 65	AH2	C	348	353	Right-handed alpha
Helix 66	AH3	C	394	405	Right-handed alpha
Helix 67	AH4	D	16	20	Right-handed alpha
Helix 68	AH5	D	20	30	Right-handed alpha
Helix 69	AH6	D	75	77	Right-handed 310
Helix 70	AH7	D	78	91	Right-handed alpha
Helix 71	AH8	D	100	104	Right-handed 310
Helix 72	AH9	D	105	109	Right-handed 310
Helix 73	AI1	D	132	138	Right-handed alpha
Helix 74	AI2	D	145	149	Right-handed 310
Helix 75	AI3	D	151	160	Right-handed alpha
Helix 76	AI4	D	169	178	Right-handed alpha
Helix 77	AI5	D	194	208	Right-handed alpha
Helix 78	AI6	D	210	219	Right-handed alpha
Helix 79	AI7	D	219	224	Right-handed alpha
Helix 80	AI8	D	233	240	Right-handed 310
Helix 81	AI9	D	261	265	Right-handed 310
Helix 82	AJ1	D	279	292	Right-handed alpha
Helix 83	AJ2	D	303	312	Right-handed alpha
Helix 84	AJ3	D	315	319	Right-handed 310
Helix 85	AJ4	D	320	325	Right-handed alpha
Helix 86	AJ5	D	327	335	Right-handed 310
Helix 87	AJ6	D	348	353	Right-handed alpha
Helix 88	AJ7	D	394	406	Right-handed alpha

There are 24 sheets in PDB entry 7PP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	14	15	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	48	59	anti-parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	379	384	anti-parallel
Strand 5	A	370	374	anti-parallel
Strand 6	A	361	364	anti-parallel
Strand 7	A	344	346	anti-parallel
Strand 8	A	337	339	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	277	278	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	123	125	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	256	first strand
Strand 2	A	243	247	anti-parallel
Strand 3	A	387	388	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	299	300	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	14	15	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	48	59	anti-parallel
Strand 3	B	38	45	anti-parallel
Strand 4	B	379	384	anti-parallel
Strand 5	B	370	374	anti-parallel
Strand 6	B	361	364	anti-parallel
Strand 7	B	344	346	anti-parallel
Strand 8	B	337	339	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	277	278	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	123	125	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	256	first strand
Strand 2	B	243	247	anti-parallel
Strand 3	B	387	388	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	299	300	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	14	15	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	48	59	anti-parallel
Strand 3	C	38	45	anti-parallel
Strand 4	C	379	384	anti-parallel
Strand 5	C	370	374	anti-parallel
Strand 6	C	361	364	anti-parallel
Strand 7	C	344	346	anti-parallel
Strand 8	C	337	339	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	277	278	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	123	125	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	256	first strand
Strand 2	C	243	247	anti-parallel
Strand 3	C	387	388	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	299	300	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	14	15	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	48	59	anti-parallel
Strand 3	D	38	45	anti-parallel
Strand 4	D	379	384	anti-parallel
Strand 5	D	370	374	anti-parallel
Strand 6	D	361	364	anti-parallel
Strand 7	D	344	346	anti-parallel
Strand 8	D	337	339	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	277	278	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	116	first strand
Strand 2	D	123	125	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	256	first strand
Strand 2	D	243	247	anti-parallel
Strand 3	D	387	388	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	299	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PP3