Analysis of interatomic Contacts of Structural Units in PDB entry:
7PPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PPJ entry

There is 1 chain in PDB entry 7PPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3ASP 684
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7PPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 30Right-handed alpha
Helix 2
AA2
A
32 54Right-handed alpha
Helix 3
AA3
A
79 84Right-handed 310
Helix 4
AA4
A
129 142Right-handed alpha
Helix 5
AA5
A
170 178Right-handed alpha
Helix 6
AA6
A
203 222Right-handed alpha
Helix 7
AA7
A
247 261Right-handed alpha
Helix 8
AA8
A
324 333Right-handed alpha
Helix 9
AA9
A
369 378Right-handed alpha
Helix 10
AB1
A
389 400Right-handed alpha
Helix 11
AB2
A
402 411Right-handed alpha
Helix 12
AB3
A
424 430Right-handed alpha
Helix 13
AB4
A
462 480Right-handed alpha
Helix 14
AB5
A
525 538Right-handed alpha
Helix 15
AB6
A
557 566Right-handed alpha
Helix 16
AB7
A
582 599Right-handed alpha
Helix 17
AB8
A
602 604Right-handed 310
Helix 18
AB9
A
612 621Right-handed alpha
Helix 19
AC1
A
631 637Right-handed alpha
Helix 20
AC2
A
651 654Right-handed 310
Helix 21
AC3
A
660 671Right-handed alpha
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There are 8 sheets in PDB entry 7PPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
56 61parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
86 91anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
125 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
226 229parallel
Strand 3
A
288 298anti-parallel
Strand 4
A
276 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
319 322anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 347first strand
Strand 2
A
362 364anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
417 422parallel
Strand 3
A
437 444anti-parallel
Strand 4
A
451 456anti-parallel
Strand 5
A
491 496parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 541first strand
Strand 2
A
553 555anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
A
679 682parallel
Strand 3
A
645 649parallel
Strand 4
A
606 609parallel
Strand 5
A
628 629parallel
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