Analysis of interatomic Contacts of Structural Units in PDB entry:
7PPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PPO entry

There are 4 chains in PDB entry 7PPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 231THR 859
A
 SER 861THR 904
C
 LYS 100THR 848
B
 ASP 3MET 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 7PPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 251Right-handed alpha
Helix 2
AA2
A
278 302Right-handed alpha
Helix 3
AA3
A
314 318Right-handed 310
Helix 4
AA4
A
319 331Right-handed alpha
Helix 5
AA5
A
343 365Right-handed alpha
Helix 6
AA6
A
376 389Right-handed alpha
Helix 7
AA7
A
397 409Right-handed alpha
Helix 8
AA8
A
417 430Right-handed alpha
Helix 9
AA9
A
434 452Right-handed alpha
Helix 10
AB1
A
515 520Right-handed alpha
Helix 11
AB2
A
522 527Right-handed alpha
Helix 12
AB3
A
544 553Right-handed alpha
Helix 13
AB4
A
554 563Right-handed alpha
Helix 14
AB5
A
563 587Right-handed alpha
Helix 15
AB6
A
772 787Right-handed alpha
Helix 16
AB7
A
799 808Right-handed alpha
Helix 17
AB8
A
824 831Right-handed alpha
Helix 18
AB9
C
135 158Right-handed alpha
Helix 19
AC1
C
159 163Right-handed 310
Helix 20
AC2
C
164 182Right-handed alpha
Helix 21
AC3
C
184 206Right-handed alpha
Helix 22
AC4
C
206 218Right-handed alpha
Helix 23
AC5
C
222 228Right-handed alpha
Helix 24
AC6
C
236 246Right-handed alpha
Helix 25
AC7
C
251 261Right-handed alpha
Helix 26
AC8
C
265 269Right-handed 310
Helix 27
AC9
C
270 281Right-handed alpha
Helix 28
AD1
C
301 311Right-handed alpha
Helix 29
AD2
C
374 391Right-handed alpha
Helix 30
AD3
C
391 396Right-handed alpha
Helix 31
AD4
C
412 419Right-handed alpha
Helix 32
AD5
C
424 432Right-handed alpha
Helix 33
AD6
C
446 451Right-handed 310
Helix 34
AD7
C
459 481Right-handed alpha
Helix 35
AD8
C
493 500Right-handed 310
Helix 36
AD9
C
550 552Right-handed 310
Helix 37
AE1
C
556 563Right-handed alpha
Helix 38
AE2
C
563 569Right-handed alpha
Helix 39
AE3
C
589 622Right-handed alpha
Helix 40
AE4
C
627 655Right-handed alpha
Helix 41
AE5
C
657 669Right-handed alpha
Helix 42
AE6
C
670 682Right-handed alpha
Helix 43
AE7
C
683 688Right-handed 310
Helix 44
AE8
C
690 703Right-handed alpha
Helix 45
AE9
C
738 771Right-handed alpha
Helix 46
AF1
C
780 793Right-handed alpha
Helix 47
AF2
C
799 817Right-handed alpha
Helix 48
AF3
C
825 848Right-handed alpha
Helix 49
AF4
B
6 21Right-handed alpha
Helix 50
AF5
B
32 39Right-handed alpha
Helix 51
AF6
B
45 57Right-handed alpha
Helix 52
AF7
B
66 77Right-handed alpha
Helix 53
AF8
B
82 94Right-handed alpha
Helix 54
AF9
B
103 110Right-handed alpha
Helix 55
AG1
B
118 129Right-handed alpha
Helix 56
AG2
B
139 144Right-handed alpha
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There are 10 sheets in PDB entry 7PPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
270 272anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 469first strand
Strand 2
A
474 475anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 768first strand
Strand 2
A
836 841anti-parallel
Strand 3
A
891 899parallel
Strand 4
A
871 875anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 822first strand
Strand 2
A
862 866anti-parallel
Strand 3
A
849 851anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 109first strand
Strand 2
C
316 320anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 124first strand
Strand 2
C
127 133anti-parallel
Strand 3
C
582 585parallel
Strand 4
C
576 577anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
299 300anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
346 350first strand
Strand 2
C
353 357anti-parallel
Strand 3
C
363 368anti-parallel
Strand 4
C
437 445anti-parallel
Strand 5
C
403 411anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
482 483first strand
Strand 2
C
547 548anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
63 65anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il