Analysis of interatomic Contacts of Structural Units in PDB entry:
7PPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PPS entry

There are 2 chains in PDB entry 7PPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 404
B
 MET 1GLN 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 7PPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
36 42Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
61 66Right-handed alpha
Helix 5
AA5
A
69 87Right-handed alpha
Helix 6
AA6
A
89 94Right-handed alpha
Helix 7
AA7
A
108 123Right-handed alpha
Helix 8
AA8
A
124 128Right-handed 310
Helix 9
AA9
A
130 136Right-handed alpha
Helix 10
AB1
A
138 146Right-handed alpha
Helix 11
AB2
A
159 161Right-handed 310
Helix 12
AB3
A
162 177Right-handed alpha
Helix 13
AB4
A
192 202Right-handed alpha
Helix 14
AB5
A
212 216Right-handed 310
Helix 15
AB6
A
241 248Right-handed alpha
Helix 16
AB7
A
272 284Right-handed alpha
Helix 17
AB8
A
300 316Right-handed alpha
Helix 18
AB9
A
325 330Right-handed alpha
Helix 19
AC1
A
332 334Right-handed 310
Helix 20
AC2
A
335 351Right-handed alpha
Helix 21
AC3
A
363 367Right-handed 310
Helix 22
AC4
B
18 29Right-handed alpha
Helix 23
AC5
B
36 42Right-handed alpha
Helix 24
AC6
B
55 60Right-handed alpha
Helix 25
AC7
B
61 66Right-handed alpha
Helix 26
AC8
B
69 87Right-handed alpha
Helix 27
AC9
B
89 94Right-handed alpha
Helix 28
AD1
B
108 123Right-handed alpha
Helix 29
AD2
B
124 128Right-handed 310
Helix 30
AD3
B
130 136Right-handed alpha
Helix 31
AD4
B
138 146Right-handed alpha
Helix 32
AD5
B
159 161Right-handed 310
Helix 33
AD6
B
162 177Right-handed alpha
Helix 34
AD7
B
192 202Right-handed alpha
Helix 35
AD8
B
212 216Right-handed 310
Helix 36
AD9
B
241 247Right-handed alpha
Helix 37
AE1
B
272 284Right-handed alpha
Helix 38
AE2
B
300 316Right-handed alpha
Helix 39
AE3
B
317 319Right-handed 310
Helix 40
AE4
B
325 330Right-handed alpha
Helix 41
AE5
B
332 334Right-handed 310
Helix 42
AE6
B
335 351Right-handed alpha
Helix 43
AE7
B
363 367Right-handed 310
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There are 4 sheets in PDB entry 7PPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
292 294parallel
Strand 3
A
383 390parallel
Strand 4
A
394 402anti-parallel
Strand 5
A
253 262anti-parallel
Strand 6
A
4 12anti-parallel
Strand 7
A
232 240anti-parallel
Strand 8
A
182 189anti-parallel
Strand 9
A
98 103parallel
Strand 10
A
154 158parallel
Strand 11
B
154 158anti-parallel
Strand 12
B
98 103parallel
Strand 13
B
182 189parallel
Strand 14
B
232 240anti-parallel
Strand 15
B
4 12anti-parallel
Strand 16
B
253 262anti-parallel
Strand 17
B
394 402anti-parallel
Strand 18
B
383 390anti-parallel
Strand 19
B
292 294parallel
Strand 20
B
321 323parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 35first strand
Strand 2
B
48 50anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
376 377anti-parallel
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