Analysis of interatomic Contacts of Structural Units in PDB entry:
7PQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PQG entry

There are 2 chains in PDB entry 7PQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1VAL 124
A
 PHE 12PHE 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7PQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
62 65Right-handed 310
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
B
109 113Right-handed 310
Helix 4
AA4
A
20 44Right-handed alpha
Helix 5
AA5
A
47 55Right-handed alpha
Helix 6
AA6
A
58 83Right-handed alpha
Helix 7
AA7
A
86 98Right-handed alpha
Helix 8
AA8
A
102 113Right-handed alpha
Helix 9
AA9
A
115 143Right-handed alpha
Helix 10
AB1
A
148 153Right-handed 310
Helix 11
AB2
A
155 179Right-handed alpha
Helix 12
AB3
A
180 182Right-handed 310
Helix 13
AB4
A
183 210Right-handed alpha
Helix 14
AB5
A
211 218Right-handed alpha
Helix 15
AB6
A
219 244Right-handed alpha
Helix 16
AB7
A
247 260Right-handed alpha
Helix 17
AB8
A
262 274Right-handed alpha
Helix 18
AB9
A
275 280Right-handed alpha
Helix 19
AC1
A
281 283Right-handed 310
Helix 20
AC2
A
284 310Right-handed alpha
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There are 3 sheets in PDB entry 7PQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
71 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
49 52anti-parallel
Strand 3
B
33 36anti-parallel
Strand 4
B
96 99anti-parallel
Strand 5
B
115 116anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
121 122anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il