Analysis of interatomic Contacts of Structural Units in PDB entry:
7PQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PQM entry

There are 2 chains in PDB entry 7PQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 29TYR 231
B
 LEU 30TYR 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7PQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
37 42Right-handed alpha
Helix 3
AA3
A
47 67Right-handed alpha
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
133 140Right-handed alpha
Helix 6
AA6
A
196 211Right-handed alpha
Helix 7
AA7
B
31 36Right-handed alpha
Helix 8
AA8
B
37 42Right-handed alpha
Helix 9
AA9
B
47 67Right-handed alpha
Helix 10
AB1
B
103 111Right-handed alpha
Helix 11
AB2
B
133 140Right-handed alpha
Helix 12
AB3
B
196 211Right-handed alpha
Helix 13
AB4
B
222 224Right-handed 310
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There are 4 sheets in PDB entry 7PQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
169 173anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
153 160anti-parallel
Strand 3
A
141 150anti-parallel
Strand 4
A
178 185anti-parallel
Strand 5
A
83 87anti-parallel
Strand 6
A
72 77anti-parallel
Strand 7
A
215 220parallel
Strand 8
A
225 229anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
169 173anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
141 150anti-parallel
Strand 4
B
178 185anti-parallel
Strand 5
B
83 87anti-parallel
Strand 6
B
72 77anti-parallel
Strand 7
B
215 220parallel
Strand 8
B
225 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il