Analysis of interatomic Contacts of Structural Units in PDB entry:
7PQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PQQ entry

There are 2 chains in PDB entry 7PQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 12LYS 309
B
 VAL 2SER 895
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7PQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 30Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
44 46Right-handed 310
Helix 4
AA4
A
47 49Right-handed 310
Helix 5
AA5
A
50 57Right-handed alpha
Helix 6
AA6
A
58 70Right-handed alpha
Helix 7
AA7
A
71 84Right-handed alpha
Helix 8
AA8
A
88 99Right-handed alpha
Helix 9
AA9
A
105 111Right-handed alpha
Helix 10
AB1
A
115 122Right-handed alpha
Helix 11
AB2
A
133 138Right-handed alpha
Helix 12
AB3
A
156 180Right-handed alpha
Helix 13
AB4
A
181 210Right-handed alpha
Helix 14
AB5
A
213 218Right-handed alpha
Helix 15
AB6
A
219 243Right-handed alpha
Helix 16
AB7
A
250 259Right-handed alpha
Helix 17
AB8
A
265 274Right-handed alpha
Helix 18
AB9
A
275 280Right-handed alpha
Helix 19
AC1
A
283 307Right-handed alpha
Helix 20
AC2
B
879 883Right-handed 310
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There are 3 sheets in PDB entry 7PQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
790 794anti-parallel
Strand 3
B
848 852anti-parallel
Strand 4
B
839 842anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
815 822first strand
Strand 2
B
803 809anti-parallel
Strand 3
B
862 869anti-parallel
Strand 4
B
885 886anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
815 822first strand
Strand 2
B
803 809anti-parallel
Strand 3
B
862 869anti-parallel
Strand 4
B
890 892anti-parallel
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