Analysis of interatomic Contacts of Structural Units in PDB entry:
7PQS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PQS entry

There are 2 chains in PDB entry 7PQS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 66SER 438
B
 GLY 66SER 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7PQS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 134Right-handed alpha
Helix 2
AA2
A
138 144Right-handed 310
Helix 3
AA3
A
172 179Right-handed alpha
Helix 4
AA4
A
185 206Right-handed alpha
Helix 5
AA5
A
215 217Right-handed 310
Helix 6
AA6
A
224 238Right-handed alpha
Helix 7
AA7
A
267 274Right-handed 310
Helix 8
AA8
A
280 284Right-handed 310
Helix 9
AA9
A
297 301Right-handed 310
Helix 10
AB1
A
302 308Right-handed alpha
Helix 11
AB2
A
313 330Right-handed alpha
Helix 12
AB3
A
343 357Right-handed alpha
Helix 13
AB4
A
360 367Right-handed alpha
Helix 14
AB5
A
369 374Right-handed alpha
Helix 15
AB6
A
390 398Right-handed alpha
Helix 16
AB7
A
402 414Right-handed alpha
Helix 17
AB8
A
415 418Right-handed 310
Helix 18
AB9
A
420 424Right-handed 310
Helix 19
AC1
A
426 431Right-handed alpha
Helix 20
AC2
A
432 438Right-handed 310
Helix 21
AC3
B
114 134Right-handed alpha
Helix 22
AC4
B
138 144Right-handed 310
Helix 23
AC5
B
172 179Right-handed alpha
Helix 24
AC6
B
185 206Right-handed alpha
Helix 25
AC7
B
215 217Right-handed 310
Helix 26
AC8
B
224 237Right-handed alpha
Helix 27
AC9
B
267 274Right-handed 310
Helix 28
AD1
B
280 284Right-handed 310
Helix 29
AD2
B
297 301Right-handed 310
Helix 30
AD3
B
302 308Right-handed alpha
Helix 31
AD4
B
313 330Right-handed alpha
Helix 32
AD5
B
343 357Right-handed alpha
Helix 33
AD6
B
360 367Right-handed alpha
Helix 34
AD7
B
369 374Right-handed alpha
Helix 35
AD8
B
390 398Right-handed alpha
Helix 36
AD9
B
402 414Right-handed alpha
Helix 37
AE1
B
415 418Right-handed 310
Helix 38
AE2
B
420 424Right-handed 310
Helix 39
AE3
B
426 431Right-handed alpha
Helix 40
AE4
B
432 438Right-handed 310
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There are 6 sheets in PDB entry 7PQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
80 88anti-parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
104 111anti-parallel
Strand 5
A
158 165anti-parallel
Strand 6
A
147 155anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
219 221anti-parallel
Strand 3
A
276 278anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
285 286anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
80 88anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
104 111anti-parallel
Strand 5
B
158 165anti-parallel
Strand 6
B
149 155anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 171first strand
Strand 2
B
219 221anti-parallel
Strand 3
B
276 278anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
285 286anti-parallel
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