Analysis of interatomic Contacts of Structural Units in PDB entry:
7PR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PR9 entry

There are 2 chains in PDB entry 7PR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 10	ALA 446
B	PRO 9	ALA 446

There are 26 helices in PDB entry 7PR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	42	Right-handed 310
Helix 2	AA2	A	49	60	Right-handed alpha
Helix 3	AA3	A	68	74	Right-handed 310
Helix 4	AA4	A	89	104	Right-handed alpha
Helix 5	AA5	A	117	133	Right-handed alpha
Helix 6	AA6	A	144	148	Right-handed 310
Helix 7	AA7	A	159	178	Right-handed alpha
Helix 8	AA8	A	195	203	Right-handed alpha
Helix 9	AA9	A	217	221	Right-handed 310
Helix 10	AB1	A	222	228	Right-handed alpha
Helix 11	AB2	A	232	247	Right-handed alpha
Helix 12	AB3	A	271	287	Right-handed alpha
Helix 13	AB4	A	318	329	Right-handed alpha
Helix 14	AB5	B	36	42	Right-handed 310
Helix 15	AB6	B	49	60	Right-handed alpha
Helix 16	AB7	B	68	74	Right-handed 310
Helix 17	AB8	B	89	104	Right-handed alpha
Helix 18	AB9	B	117	133	Right-handed alpha
Helix 19	AC1	B	144	148	Right-handed 310
Helix 20	AC2	B	159	178	Right-handed alpha
Helix 21	AC3	B	195	203	Right-handed alpha
Helix 22	AC4	B	217	221	Right-handed 310
Helix 23	AC5	B	222	228	Right-handed alpha
Helix 24	AC6	B	232	247	Right-handed alpha
Helix 25	AC7	B	271	287	Right-handed alpha
Helix 26	AC8	B	318	329	Right-handed alpha

There are 12 sheets in PDB entry 7PR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	372	377	parallel
Strand 4	A	430	435	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	333	335	anti-parallel
Strand 3	A	347	354	anti-parallel
Strand 4	A	359	365	anti-parallel
Strand 5	A	439	445	anti-parallel
Strand 6	A	386	393	anti-parallel
Strand 7	A	404	405	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	333	335	anti-parallel
Strand 3	A	347	354	anti-parallel
Strand 4	A	359	365	anti-parallel
Strand 5	A	439	445	anti-parallel
Strand 6	A	386	393	anti-parallel
Strand 7	A	422	425	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	63	66	parallel
Strand 3	A	106	111	parallel
Strand 4	A	136	141	parallel
Strand 5	A	183	188	parallel
Strand 6	A	207	216	parallel
Strand 7	A	250	259	parallel
Strand 8	A	291	295	parallel
Strand 9	A	31	35	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	87	88	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	313	317	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	10	18	anti-parallel
Strand 3	B	371	377	parallel
Strand 4	B	430	435	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	333	335	anti-parallel
Strand 3	B	347	354	anti-parallel
Strand 4	B	359	365	anti-parallel
Strand 5	B	439	445	anti-parallel
Strand 6	B	386	393	anti-parallel
Strand 7	B	404	405	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	333	335	anti-parallel
Strand 3	B	347	354	anti-parallel
Strand 4	B	359	365	anti-parallel
Strand 5	B	439	445	anti-parallel
Strand 6	B	386	393	anti-parallel
Strand 7	B	422	425	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	63	66	parallel
Strand 3	B	106	111	parallel
Strand 4	B	136	141	parallel
Strand 5	B	183	188	parallel
Strand 6	B	207	216	parallel
Strand 7	B	250	259	parallel
Strand 8	B	291	295	parallel
Strand 9	B	31	35	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	87	88	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	313	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PR9