Analysis of interatomic Contacts of Structural Units in PDB entry:
7PRV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PRV entry

There are 5 chains in PDB entry 7PRV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 417GLN 776
B
 PRO 418GLN 776
C
 T 1 A 22
D
 T 1 A 22
F
 GLU 140PRO 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 7PRV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 451Right-handed alpha
Helix 2
AA2
A
473 485Right-handed alpha
Helix 3
AA3
A
531 539Right-handed alpha
Helix 4
AA4
A
555 580Right-handed alpha
Helix 5
AA5
A
583 587Right-handed 310
Helix 6
AA6
A
588 599Right-handed alpha
Helix 7
AA7
A
600 616Right-handed alpha
Helix 8
AA8
A
630 635Right-handed alpha
Helix 9
AA9
A
639 656Right-handed alpha
Helix 10
AB1
A
659 672Right-handed alpha
Helix 11
AB2
A
682 706Right-handed alpha
Helix 12
AB3
A
710 742Right-handed alpha
Helix 13
AB4
A
743 746Right-handed 310
Helix 14
AB5
A
750 759Right-handed alpha
Helix 15
AB6
A
760 765Right-handed alpha
Helix 16
AB7
B
438 451Right-handed alpha
Helix 17
AB8
B
473 485Right-handed alpha
Helix 18
AB9
B
531 539Right-handed alpha
Helix 19
AC1
B
555 580Right-handed alpha
Helix 20
AC2
B
583 587Right-handed 310
Helix 21
AC3
B
588 599Right-handed alpha
Helix 22
AC4
B
600 616Right-handed alpha
Helix 23
AC5
B
630 635Right-handed alpha
Helix 24
AC6
B
639 657Right-handed alpha
Helix 25
AC7
B
659 672Right-handed alpha
Helix 26
AC8
B
682 703Right-handed alpha
Helix 27
AC9
B
707 741Right-handed alpha
Helix 28
AD1
B
750 766Right-handed alpha
Helix 29
AD2
F
142 149Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7PRV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
435 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 624first strand
Strand 2
A
627 629anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
674 676first strand
Strand 2
A
769 771anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
430 432first strand
Strand 2
B
435 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 624first strand
Strand 2
B
627 628anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
674 675first strand
Strand 2
B
770 771anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il