Analysis of interatomic Contacts of Structural Units in PDB entry:
7PSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PSD entry

There are 2 chains in PDB entry 7PSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 95LEU 674
A
 ALA 95LEU 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7PSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
95 103Right-handed alpha
Helix 2
AA2
B
110 145Right-handed alpha
Helix 3
AA3
B
159 206Right-handed alpha
Helix 4
AA4
B
207 213Right-handed alpha
Helix 5
AA5
B
217 240Right-handed alpha
Helix 6
AA6
B
240 259Right-handed alpha
Helix 7
AA7
B
260 309Right-handed alpha
Helix 8
AA8
B
309 316Right-handed alpha
Helix 9
AA9
B
318 371Right-handed alpha
Helix 10
AB1
B
376 391Right-handed alpha
Helix 11
AB2
B
392 398Right-handed 310
Helix 12
AB3
B
399 418Right-handed alpha
Helix 13
AB4
B
481 488Right-handed alpha
Helix 14
AB5
B
509 516Right-handed alpha
Helix 15
AB6
B
531 537Right-handed alpha
Helix 16
AB7
B
543 554Right-handed alpha
Helix 17
AB8
B
556 563Right-handed alpha
Helix 18
AB9
B
565 568Right-handed 310
Helix 19
AC1
B
579 595Right-handed alpha
Helix 20
AC2
B
603 607Right-handed 310
Helix 21
AC3
B
609 625Right-handed alpha
Helix 22
AC4
B
637 642Right-handed 310
Helix 23
AC5
B
661 666Right-handed alpha
Helix 24
AC6
B
670 674Right-handed 310
Helix 25
AC7
A
96 103Right-handed alpha
Helix 26
AC8
A
110 145Right-handed alpha
Helix 27
AC9
A
159 206Right-handed alpha
Helix 28
AD1
A
207 213Right-handed alpha
Helix 29
AD2
A
217 240Right-handed alpha
Helix 30
AD3
A
240 259Right-handed alpha
Helix 31
AD4
A
260 309Right-handed alpha
Helix 32
AD5
A
309 316Right-handed alpha
Helix 33
AD6
A
318 371Right-handed alpha
Helix 34
AD7
A
376 391Right-handed alpha
Helix 35
AD8
A
392 398Right-handed 310
Helix 36
AD9
A
399 418Right-handed alpha
Helix 37
AE1
A
481 488Right-handed alpha
Helix 38
AE2
A
509 516Right-handed alpha
Helix 39
AE3
A
531 537Right-handed alpha
Helix 40
AE4
A
543 554Right-handed alpha
Helix 41
AE5
A
556 563Right-handed alpha
Helix 42
AE6
A
565 568Right-handed 310
Helix 43
AE7
A
579 595Right-handed alpha
Helix 44
AE8
A
603 607Right-handed 310
Helix 45
AE9
A
609 625Right-handed alpha
Helix 46
AF1
A
637 642Right-handed 310
Helix 47
AF2
A
661 666Right-handed alpha
Helix 48
AF3
A
670 674Right-handed 310
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There are 6 sheets in PDB entry 7PSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 464first strand
Strand 2
B
441 448anti-parallel
Strand 3
B
495 500anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 519first strand
Strand 2
B
598 600parallel
Strand 3
B
630 634parallel
Strand 4
B
469 473parallel
Strand 5
B
646 650parallel
Strand 6
B
655 659anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 530first strand
Strand 2
B
570 571anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 464first strand
Strand 2
A
441 448anti-parallel
Strand 3
A
495 500anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
598 600parallel
Strand 3
A
630 634parallel
Strand 4
A
469 473parallel
Strand 5
A
646 650parallel
Strand 6
A
655 659anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
570 571anti-parallel
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