Analysis of interatomic Contacts of Structural Units in PDB entry:
7PTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PTF entry

There are 3 chains in PDB entry 7PTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10GLY 221
B
 SER 9GLU 220
C
 GLY 17GLY 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7PTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 24Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
35 55Right-handed alpha
Helix 4
AA4
A
91 99Right-handed alpha
Helix 5
AA5
A
110 115Right-handed alpha
Helix 6
AA6
A
115 121Right-handed alpha
Helix 7
AA7
A
122 128Right-handed alpha
Helix 8
AA8
A
184 199Right-handed alpha
Helix 9
AA9
B
10 24Right-handed alpha
Helix 10
AB1
B
25 30Right-handed alpha
Helix 11
AB2
B
35 55Right-handed alpha
Helix 12
AB3
B
92 99Right-handed alpha
Helix 13
AB4
B
105 110Right-handed 310
Helix 14
AB5
B
121 128Right-handed alpha
Helix 15
AB6
B
184 199Right-handed alpha
Helix 16
AB7
C
18 24Right-handed alpha
Helix 17
AB8
C
25 30Right-handed alpha
Helix 18
AB9
C
35 55Right-handed alpha
Helix 19
AC1
C
92 99Right-handed alpha
Helix 20
AC2
C
101 106Right-handed 310
Helix 21
AC3
C
107 114Right-handed alpha
Helix 22
AC4
C
115 118Right-handed 310
Helix 23
AC5
C
121 128Right-handed alpha
Helix 24
AC6
C
184 199Right-handed alpha
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There are 8 sheets in PDB entry 7PTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
157 161anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
141 148anti-parallel
Strand 3
A
129 138anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
71 75anti-parallel
Strand 6
A
60 65anti-parallel
Strand 7
A
203 208parallel
Strand 8
A
214 217anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
141 148anti-parallel
Strand 3
B
157 161anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
141 148anti-parallel
Strand 3
B
129 138anti-parallel
Strand 4
B
166 173anti-parallel
Strand 5
B
71 75anti-parallel
Strand 6
B
60 65anti-parallel
Strand 7
B
203 208parallel
Strand 8
B
214 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
90 91anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
141 148anti-parallel
Strand 3
C
157 161anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 152first strand
Strand 2
C
141 148anti-parallel
Strand 3
C
129 138anti-parallel
Strand 4
C
166 173anti-parallel
Strand 5
C
71 75anti-parallel
Strand 6
C
60 65anti-parallel
Strand 7
C
203 208parallel
Strand 8
C
214 218anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 85first strand
Strand 2
C
90 91anti-parallel
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