Analysis of interatomic Contacts of Structural Units in PDB entry:
7PTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PTJ entry

There are 3 chains in PDB entry 7PTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 514
B	GLY 4	HIS 515
C	GLY 4	HIS 201

There are 96 helices in PDB entry 7PTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed 310
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	53	64	Right-handed alpha
Helix 4	AA4	A	66	71	Right-handed alpha
Helix 5	AA5	A	85	93	Right-handed alpha
Helix 6	AA6	A	147	152	Right-handed alpha
Helix 7	AA7	A	159	181	Right-handed alpha
Helix 8	AA8	A	207	212	Right-handed alpha
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	228	232	Right-handed 310
Helix 11	AB2	A	233	243	Right-handed alpha
Helix 12	AB3	A	244	248	Right-handed 310
Helix 13	AB4	A	251	283	Right-handed alpha
Helix 14	AB5	A	285	287	Right-handed 310
Helix 15	AB6	A	302	306	Right-handed 310
Helix 16	AB7	A	313	318	Right-handed alpha
Helix 17	AB8	A	341	350	Right-handed alpha
Helix 18	AB9	A	353	358	Right-handed alpha
Helix 19	AC1	A	359	361	Right-handed 310
Helix 20	AC2	A	366	371	Right-handed alpha
Helix 21	AC3	A	431	449	Right-handed alpha
Helix 22	AC4	A	450	473	Right-handed alpha
Helix 23	AC5	A	487	491	Right-handed 310
Helix 24	AC6	A	498	507	Right-handed alpha
Helix 25	AC7	B	17	21	Right-handed 310
Helix 26	AC8	B	31	40	Right-handed alpha
Helix 27	AC9	B	53	64	Right-handed alpha
Helix 28	AD1	B	66	71	Right-handed alpha
Helix 29	AD2	B	85	93	Right-handed alpha
Helix 30	AD3	B	147	152	Right-handed alpha
Helix 31	AD4	B	159	181	Right-handed alpha
Helix 32	AD5	B	207	212	Right-handed alpha
Helix 33	AD6	B	213	215	Right-handed 310
Helix 34	AD7	B	228	232	Right-handed 310
Helix 35	AD8	B	233	243	Right-handed alpha
Helix 36	AD9	B	244	248	Right-handed 310
Helix 37	AE1	B	251	283	Right-handed alpha
Helix 38	AE2	B	285	287	Right-handed 310
Helix 39	AE3	B	302	306	Right-handed 310
Helix 40	AE4	B	313	318	Right-handed alpha
Helix 41	AE5	B	341	350	Right-handed alpha
Helix 42	AE6	B	353	358	Right-handed alpha
Helix 43	AE7	B	359	361	Right-handed 310
Helix 44	AE8	B	366	371	Right-handed alpha
Helix 45	AE9	B	431	449	Right-handed alpha
Helix 46	AF1	B	450	473	Right-handed alpha
Helix 47	AF2	B	487	491	Right-handed 310
Helix 48	AF3	B	498	507	Right-handed alpha
Helix 49	AF4	C	17	21	Right-handed 310
Helix 50	AF5	C	31	40	Right-handed alpha
Helix 51	AF6	C	53	64	Right-handed alpha
Helix 52	AF7	C	66	71	Right-handed alpha
Helix 53	AF8	C	85	93	Right-handed alpha
Helix 54	AF9	C	147	152	Right-handed alpha
Helix 55	AG1	C	159	181	Right-handed alpha
Helix 56	AG2	C	207	212	Right-handed alpha
Helix 57	AG3	C	213	215	Right-handed 310
Helix 58	AG4	C	228	232	Right-handed 310
Helix 59	AG5	C	233	243	Right-handed alpha
Helix 60	AG6	C	244	248	Right-handed 310
Helix 61	AG7	C	251	283	Right-handed alpha
Helix 62	AG8	C	285	287	Right-handed 310
Helix 63	AG9	C	302	306	Right-handed 310
Helix 64	AH1	C	313	318	Right-handed alpha
Helix 65	AH2	C	341	350	Right-handed alpha
Helix 66	AH3	C	353	358	Right-handed alpha
Helix 67	AH4	C	359	361	Right-handed 310
Helix 68	AH5	C	366	371	Right-handed alpha
Helix 69	AH6	C	431	449	Right-handed alpha
Helix 70	AH7	C	450	473	Right-handed alpha
Helix 71	AH8	C	487	491	Right-handed 310
Helix 72	AH9	C	500	507	Right-handed alpha
Helix 73	AI1	D	17	21	Right-handed 310
Helix 74	AI2	D	31	40	Right-handed alpha
Helix 75	AI3	D	53	64	Right-handed alpha
Helix 76	AI4	D	66	71	Right-handed alpha
Helix 77	AI5	D	85	93	Right-handed alpha
Helix 78	AI6	D	147	152	Right-handed alpha
Helix 79	AI7	D	159	181	Right-handed alpha
Helix 80	AI8	D	207	212	Right-handed alpha
Helix 81	AI9	D	213	215	Right-handed 310
Helix 82	AJ1	D	228	232	Right-handed 310
Helix 83	AJ2	D	233	243	Right-handed alpha
Helix 84	AJ3	D	244	248	Right-handed 310
Helix 85	AJ4	D	251	283	Right-handed alpha
Helix 86	AJ5	D	285	287	Right-handed 310
Helix 87	AJ6	D	302	306	Right-handed 310
Helix 88	AJ7	D	313	318	Right-handed alpha
Helix 89	AJ8	D	341	350	Right-handed alpha
Helix 90	AJ9	D	353	358	Right-handed alpha
Helix 91	AK1	D	359	361	Right-handed 310
Helix 92	AK2	D	366	371	Right-handed alpha
Helix 93	AK3	D	431	449	Right-handed alpha
Helix 94	AK4	D	450	473	Right-handed alpha
Helix 95	AK5	D	487	491	Right-handed 310
Helix 96	AK6	D	498	507	Right-handed alpha

There are 16 sheets in PDB entry 7PTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	96	101	parallel
Strand 3	A	191	200	parallel
Strand 4	A	7	14	parallel
Strand 5	A	289	295	parallel
Strand 6	A	321	324	anti-parallel
Strand 7	A	41	44	anti-parallel
Strand 8	A	331	333	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	337	338	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	205	206	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	383	first strand
Strand 2	A	392	397	anti-parallel
Strand 3	A	400	405	anti-parallel
Strand 4	A	411	414	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	96	101	parallel
Strand 3	B	191	200	parallel
Strand 4	B	7	14	parallel
Strand 5	B	289	295	parallel
Strand 6	B	321	324	anti-parallel
Strand 7	B	41	44	anti-parallel
Strand 8	B	331	333	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	337	338	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	205	206	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	383	first strand
Strand 2	B	392	397	anti-parallel
Strand 3	B	400	405	anti-parallel
Strand 4	B	411	414	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	96	101	parallel
Strand 3	C	191	200	parallel
Strand 4	C	7	14	parallel
Strand 5	C	289	295	parallel
Strand 6	C	321	324	anti-parallel
Strand 7	C	41	44	anti-parallel
Strand 8	C	331	333	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	337	338	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	205	206	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	383	first strand
Strand 2	C	392	397	anti-parallel
Strand 3	C	400	405	anti-parallel
Strand 4	C	411	414	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	96	101	parallel
Strand 3	D	191	196	parallel
Strand 4	D	7	13	parallel
Strand 5	D	289	295	parallel
Strand 6	D	321	324	anti-parallel
Strand 7	D	41	44	anti-parallel
Strand 8	D	331	333	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	337	338	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	205	206	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	383	first strand
Strand 2	D	392	397	anti-parallel
Strand 3	D	400	405	anti-parallel
Strand 4	D	411	414	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PTJ