Analysis of interatomic Contacts of Structural Units in PDB entry:
7PTX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PTX entry

There is 1 chain in PDB entry 7PTX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 48LYS 1066
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 7PTX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 57Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
81 86Right-handed alpha
Helix 5
AA5
A
90 109Right-handed alpha
Helix 6
AA6
A
119 147Right-handed alpha
Helix 7
AA7
A
148 151Right-handed 310
Helix 8
AA8
A
157 178Right-handed alpha
Helix 9
AA9
A
181 190Right-handed alpha
Helix 10
AB1
A
196 204Right-handed alpha
Helix 11
AB2
A
208 225Right-handed alpha
Helix 12
AB3
A
234 269Right-handed alpha
Helix 13
AB4
A
272 296Right-handed alpha
Helix 14
AB5
A
304 320Right-handed alpha
Helix 15
AB6
A
324 348Right-handed alpha
Helix 16
AB7
A
454 468Right-handed alpha
Helix 17
AB8
A
470 484Right-handed alpha
Helix 18
AB9
A
497 506Right-handed alpha
Helix 19
AC1
A
508 515Right-handed alpha
Helix 20
AC2
A
517 524Right-handed alpha
Helix 21
AC3
A
531 537Right-handed alpha
Helix 22
AC4
A
541 550Right-handed alpha
Helix 23
AC5
A
565 571Right-handed alpha
Helix 24
AC6
A
575 584Right-handed alpha
Helix 25
AC7
A
601 608Right-handed 310
Helix 26
AC8
A
609 618Right-handed alpha
Helix 27
AC9
A
632 640Right-handed alpha
Helix 28
AD1
A
642 653Right-handed alpha
Helix 29
AD2
A
667 676Right-handed alpha
Helix 30
AD3
A
677 687Right-handed alpha
Helix 31
AD4
A
702 710Right-handed alpha
Helix 32
AD5
A
713 723Right-handed alpha
Helix 33
AD6
A
730 735Right-handed alpha
Helix 34
AD7
A
736 745Right-handed alpha
Helix 35
AD8
A
746 756Right-handed alpha
Helix 36
AD9
A
769 777Right-handed alpha
Helix 37
AE1
A
780 789Right-handed alpha
Helix 38
AE2
A
802 811Right-handed alpha
Helix 39
AE3
A
812 822Right-handed alpha
Helix 40
AE4
A
835 844Right-handed alpha
Helix 41
AE5
A
845 857Right-handed alpha
Helix 42
AE6
A
858 861Right-handed 310
Helix 43
AE7
A
870 878Right-handed alpha
Helix 44
AE8
A
879 889Right-handed alpha
Helix 45
AE9
A
893 897Right-handed 310
Helix 46
AF1
A
902 908Right-handed alpha
Helix 47
AF2
A
909 911Right-handed 310
Helix 48
AF3
A
914 921Right-handed alpha
Helix 49
AF4
A
935 943Right-handed alpha
Helix 50
AF5
A
945 955Right-handed alpha
Helix 51
AF6
A
968 980Right-handed alpha
Helix 52
AF7
A
982 992Right-handed alpha
Helix 53
AF8
A
999 1007Right-handed alpha
Helix 54
AF9
A
1009 1021Right-handed alpha
Helix 55
AG1
A
1034 1042Right-handed alpha
Helix 56
AG2
A
1054 1065Right-handed alpha
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There are 2 sheets in PDB entry 7PTX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 373first strand
Strand 2
A
420 424anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
391 397anti-parallel
Strand 3
A
431 436anti-parallel
Strand 4
A
446 448anti-parallel
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