Analysis of interatomic Contacts of Structural Units in PDB entry:
7PUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PUL entry

There are 2 chains in PDB entry 7PUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 489LYS 835
P
 GLY 2ALA 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7PUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
505 519Right-handed alpha
Helix 2
AA2
A
550 567Right-handed alpha
Helix 3
AA3
A
575 589Right-handed alpha
Helix 4
AA4
A
603 613Right-handed alpha
Helix 5
AA5
A
631 651Right-handed alpha
Helix 6
AA6
A
670 679Right-handed alpha
Helix 7
AA7
A
680 698Right-handed alpha
Helix 8
AA8
A
710 714Right-handed 310
Helix 9
AA9
A
740 747Right-handed alpha
Helix 10
AB1
A
755 759Right-handed 310
Helix 11
AB2
A
771 779Right-handed alpha
Helix 12
AB3
A
813 828Right-handed alpha
Helix 13
AB4
A
829 832Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 7PUL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
798 804parallel
Strand 3
A
751 753parallel
Strand 4
A
725 728parallel
Strand 5
A
701 705parallel
Strand 6
A
655 659parallel
Strand 7
A
592 599parallel
Strand 8
A
523 529parallel
Strand 9
A
492 498parallel
Strand 10
A
798 804parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
547 549anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il