Analysis of interatomic Contacts of Structural Units in PDB entry:
7PUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PUO entry

There are 6 chains in PDB entry 7PUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ARG 129
B
 PRO 1ARG 129
C
 PRO 1LEU 128
D
 PRO 1ARG 129
E
 PRO 1ARG 129
F
 PRO 1LYS 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 7PUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 32Right-handed alpha
Helix 2
AA2
A
34 37Right-handed 310
Helix 3
AA3
A
46 48Right-handed 310
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
79 99Right-handed alpha
Helix 6
AA6
A
101 104Right-handed 310
Helix 7
AA7
A
113 115Right-handed 310
Helix 8
AA8
A
124 128Right-handed alpha
Helix 9
AA9
B
12 32Right-handed alpha
Helix 10
AB1
B
34 37Right-handed 310
Helix 11
AB2
B
46 48Right-handed 310
Helix 12
AB3
B
58 60Right-handed 310
Helix 13
AB4
B
79 99Right-handed alpha
Helix 14
AB5
B
101 104Right-handed 310
Helix 15
AB6
B
124 128Right-handed alpha
Helix 16
AB7
C
12 32Right-handed alpha
Helix 17
AB8
C
34 37Right-handed 310
Helix 18
AB9
C
46 48Right-handed 310
Helix 19
AC1
C
58 60Right-handed 310
Helix 20
AC2
C
79 99Right-handed alpha
Helix 21
AC3
C
101 104Right-handed 310
Helix 22
AC4
C
113 115Right-handed 310
Helix 23
AC5
C
124 128Right-handed alpha
Helix 24
AC6
D
12 32Right-handed alpha
Helix 25
AC7
D
34 37Right-handed 310
Helix 26
AC8
D
46 48Right-handed 310
Helix 27
AC9
D
58 60Right-handed 310
Helix 28
AD1
D
79 99Right-handed alpha
Helix 29
AD2
D
101 104Right-handed 310
Helix 30
AD3
D
113 115Right-handed 310
Helix 31
AD4
D
124 128Right-handed alpha
Helix 32
AD5
E
12 32Right-handed alpha
Helix 33
AD6
E
34 37Right-handed 310
Helix 34
AD7
E
79 99Right-handed alpha
Helix 35
AD8
E
101 104Right-handed 310
Helix 36
AD9
E
124 128Right-handed alpha
Helix 37
AE1
F
12 32Right-handed alpha
Helix 38
AE2
F
34 37Right-handed 310
Helix 39
AE3
F
46 48Right-handed 310
Helix 40
AE4
F
58 60Right-handed 310
Helix 41
AE5
F
79 99Right-handed alpha
Helix 42
AE6
F
101 104Right-handed 310
Helix 43
AE7
F
113 115Right-handed 310
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There are 6 sheets in PDB entry 7PUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
117 119anti-parallel
Strand 3
A
106 112anti-parallel
Strand 4
A
69 75parallel
Strand 5
A
2 8anti-parallel
Strand 6
A
39 45parallel
Strand 7
C
117 119anti-parallel
Strand 8
C
122 123anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
50 52anti-parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
2 8parallel
Strand 5
B
69 75anti-parallel
Strand 6
B
106 112parallel
Strand 7
C
50 52anti-parallel
Strand 8
C
55 56anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
117 119anti-parallel
Strand 3
C
39 45anti-parallel
Strand 4
C
2 8parallel
Strand 5
C
69 75anti-parallel
Strand 6
C
106 112parallel
Strand 7
B
50 52anti-parallel
Strand 8
B
55 56anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 123first strand
Strand 2
E
117 119anti-parallel
Strand 3
D
106 112anti-parallel
Strand 4
D
69 75parallel
Strand 5
D
2 8anti-parallel
Strand 6
D
39 45parallel
Strand 7
F
117 119anti-parallel
Strand 8
F
122 123anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 56first strand
Strand 2
D
50 52anti-parallel
Strand 3
E
39 45anti-parallel
Strand 4
E
2 8parallel
Strand 5
E
69 75anti-parallel
Strand 6
E
106 112parallel
Strand 7
F
50 52anti-parallel
Strand 8
F
55 56anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
122 123first strand
Strand 2
D
117 119anti-parallel
Strand 3
F
39 45anti-parallel
Strand 4
F
2 8parallel
Strand 5
F
69 75anti-parallel
Strand 6
F
106 112parallel
Strand 7
E
50 52anti-parallel
Strand 8
E
55 56anti-parallel
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