Analysis of interatomic Contacts of Structural Units in PDB entry:
7PUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PUP entry

There is 1 chain in PDB entry 7PUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1VAL 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7PUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
50 64Right-handed alpha
Helix 4
AA4
A
76 88Right-handed alpha
Helix 5
AA5
A
101 107Right-handed alpha
Helix 6
AA6
A
134 136Right-handed 310
Helix 7
AA7
A
137 150Right-handed alpha
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
194 200Right-handed alpha
Helix 10
AB1
A
209 211Right-handed 310
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
253 256Right-handed 310
Helix 13
AB4
A
257 262Right-handed alpha
Helix 14
AB5
A
262 270Right-handed alpha
Helix 15
AB6
A
272 276Right-handed 310
Helix 16
AB7
A
298 306Right-handed alpha
Helix 17
AB8
A
333 340Right-handed 310
Helix 18
AB9
A
378 387Right-handed alpha
Helix 19
AC1
A
388 390Right-handed 310
Helix 20
AC2
A
416 432Right-handed alpha
Helix 21
AC3
A
464 484Right-handed alpha
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There are 5 sheets in PDB entry 7PUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
40 45parallel
Strand 3
A
1 7parallel
Strand 4
A
92 97parallel
Strand 5
A
114 116parallel
Strand 6
A
129 131parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
155 160parallel
Strand 3
A
204 207parallel
Strand 4
A
249 251parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
227 231anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
449 456parallel
Strand 3
A
435 442anti-parallel
Strand 4
A
357 364anti-parallel
Strand 5
A
367 374anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
346 350anti-parallel
Strand 3
A
312 316anti-parallel
Strand 4
A
327 331anti-parallel
Strand 5
A
394 397anti-parallel
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