Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PVD entry

There are 6 chains in PDB entry 7PVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLY 260	TYR 419
b	GLY 260	TYR 419
c	GLY 260	TYR 419
A	THR 59	LEU 259
B	THR 59	LEU 259
C	THR 59	LEU 259

There are 36 helices in PDB entry 7PVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	294	300	Right-handed alpha
Helix 2	AA2	a	301	303	Right-handed 310
Helix 3	AA3	a	308	325	Right-handed alpha
Helix 4	AA4	a	333	345	Right-handed alpha
Helix 5	AA5	a	348	360	Right-handed alpha
Helix 6	AA6	a	399	419	Right-handed alpha
Helix 7	AA7	b	294	300	Right-handed alpha
Helix 8	AA8	b	301	303	Right-handed 310
Helix 9	AA9	b	308	325	Right-handed alpha
Helix 10	AB1	b	333	345	Right-handed alpha
Helix 11	AB2	b	348	360	Right-handed alpha
Helix 12	AB3	b	399	419	Right-handed alpha
Helix 13	AB4	c	294	300	Right-handed alpha
Helix 14	AB5	c	301	303	Right-handed 310
Helix 15	AB6	c	308	325	Right-handed alpha
Helix 16	AB7	c	333	345	Right-handed alpha
Helix 17	AB8	c	348	360	Right-handed alpha
Helix 18	AB9	c	399	419	Right-handed alpha
Helix 19	AC1	A	74	79	Right-handed 310
Helix 20	AC2	A	119	126	Right-handed alpha
Helix 21	AC3	A	130	143	Right-handed alpha
Helix 22	AC4	A	157	161	Right-handed 310
Helix 23	AC5	A	182	195	Right-handed alpha
Helix 24	AC6	A	238	248	Right-handed alpha
Helix 25	AC7	B	74	79	Right-handed 310
Helix 26	AC8	B	119	126	Right-handed alpha
Helix 27	AC9	B	130	143	Right-handed alpha
Helix 28	AD1	B	157	161	Right-handed 310
Helix 29	AD2	B	182	195	Right-handed alpha
Helix 30	AD3	B	238	248	Right-handed alpha
Helix 31	AD4	C	74	79	Right-handed 310
Helix 32	AD5	C	119	126	Right-handed alpha
Helix 33	AD6	C	130	143	Right-handed alpha
Helix 34	AD7	C	157	161	Right-handed 310
Helix 35	AD8	C	182	195	Right-handed alpha
Helix 36	AD9	C	238	248	Right-handed alpha

There are 9 sheets in PDB entry 7PVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	279	280	first strand
Strand 2	a	291	292	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	392	393	first strand
Strand 2	a	384	389	anti-parallel
Strand 3	a	363	374	anti-parallel
Strand 4	A	66	72	anti-parallel
Strand 5	A	61	62	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	279	280	first strand
Strand 2	b	291	292	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	392	393	first strand
Strand 2	b	384	389	anti-parallel
Strand 3	b	363	374	anti-parallel
Strand 4	B	66	72	anti-parallel
Strand 5	B	61	62	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	279	280	first strand
Strand 2	c	291	292	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	392	393	first strand
Strand 2	c	384	389	anti-parallel
Strand 3	c	363	374	anti-parallel
Strand 4	C	66	72	anti-parallel
Strand 5	C	61	62	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	225	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	154	156	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	225	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	154	156	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	225	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	154	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVD