Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PVH entry

There are 2 chains in PDB entry 7PVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 66ASN 260
B
 TRP 68GLU 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7PVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 87Right-handed 310
Helix 2
AA2
A
98 109Right-handed alpha
Helix 3
AA3
A
125 129Right-handed 310
Helix 4
AA4
A
131 139Right-handed alpha
Helix 5
AA5
A
157 161Right-handed 310
Helix 6
AA6
A
214 222Right-handed alpha
Helix 7
AA7
A
228 232Right-handed 310
Helix 8
AA8
A
238 245Right-handed alpha
Helix 9
AA9
B
80 87Right-handed 310
Helix 10
AB1
B
98 109Right-handed alpha
Helix 11
AB2
B
125 129Right-handed 310
Helix 12
AB3
B
131 139Right-handed alpha
Helix 13
AB4
B
157 161Right-handed 310
Helix 14
AB5
B
214 222Right-handed alpha
Helix 15
AB6
B
228 232Right-handed 310
Helix 16
AB7
B
238 245Right-handed alpha
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There are 6 sheets in PDB entry 7PVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
184 198anti-parallel
Strand 3
A
212 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
184 198anti-parallel
Strand 3
A
166 177anti-parallel
Strand 4
A
69 77anti-parallel
Strand 5
A
251 257anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
154 155anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
184 198anti-parallel
Strand 3
B
212 213anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 208first strand
Strand 2
B
184 198anti-parallel
Strand 3
B
166 177anti-parallel
Strand 4
B
69 77anti-parallel
Strand 5
B
251 255anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
154 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il