Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PVJ entry

There are 3 chains in PDB entry 7PVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 12	GLY 588
B	SER 10	GLU 586
C	LEU 13	CYS 153

There are 74 helices in PDB entry 7PVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	24	Right-handed alpha
Helix 2	AA2	A	36	46	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	85	95	Right-handed alpha
Helix 5	AA5	A	96	103	Right-handed alpha
Helix 6	AA6	A	115	128	Right-handed alpha
Helix 7	AA7	A	150	157	Right-handed alpha
Helix 8	AA8	A	157	180	Right-handed alpha
Helix 9	AA9	A	192	218	Right-handed alpha
Helix 10	AB1	A	267	272	Right-handed alpha
Helix 11	AB2	A	274	279	Right-handed alpha
Helix 12	AB3	A	294	307	Right-handed alpha
Helix 13	AB4	A	324	338	Right-handed alpha
Helix 14	AB5	A	396	399	Right-handed 310
Helix 15	AB6	A	400	405	Right-handed alpha
Helix 16	AB7	A	431	434	Right-handed 310
Helix 17	AB8	A	440	458	Right-handed alpha
Helix 18	AB9	A	484	493	Right-handed alpha
Helix 19	AC1	A	506	510	Right-handed 310
Helix 20	AC2	A	514	519	Right-handed 310
Helix 21	AC3	A	529	531	Right-handed 310
Helix 22	AC4	A	543	552	Right-handed alpha
Helix 23	AC5	A	553	557	Right-handed 310
Helix 24	AC6	A	560	566	Right-handed alpha
Helix 25	AC7	A	574	580	Right-handed 310
Helix 26	AC8	B	13	24	Right-handed alpha
Helix 27	AC9	B	36	46	Right-handed alpha
Helix 28	AD1	B	57	69	Right-handed alpha
Helix 29	AD2	B	85	95	Right-handed alpha
Helix 30	AD3	B	96	103	Right-handed alpha
Helix 31	AD4	B	115	128	Right-handed alpha
Helix 32	AD5	B	150	157	Right-handed alpha
Helix 33	AD6	B	157	180	Right-handed alpha
Helix 34	AD7	B	192	218	Right-handed alpha
Helix 35	AD8	B	267	272	Right-handed alpha
Helix 36	AD9	B	274	279	Right-handed alpha
Helix 37	AE1	B	294	307	Right-handed alpha
Helix 38	AE2	B	324	338	Right-handed alpha
Helix 39	AE3	B	396	399	Right-handed 310
Helix 40	AE4	B	400	405	Right-handed alpha
Helix 41	AE5	B	431	434	Right-handed 310
Helix 42	AE6	B	440	458	Right-handed alpha
Helix 43	AE7	B	484	493	Right-handed alpha
Helix 44	AE8	B	506	510	Right-handed 310
Helix 45	AE9	B	514	519	Right-handed 310
Helix 46	AF1	B	529	531	Right-handed 310
Helix 47	AF2	B	543	552	Right-handed alpha
Helix 48	AF3	B	553	558	Right-handed 310
Helix 49	AF4	B	560	566	Right-handed alpha
Helix 50	AF5	B	574	580	Right-handed 310
Helix 51	AF6	C	14	24	Right-handed alpha
Helix 52	AF7	C	36	46	Right-handed alpha
Helix 53	AF8	C	57	69	Right-handed alpha
Helix 54	AF9	C	87	95	Right-handed alpha
Helix 55	AG1	C	96	103	Right-handed alpha
Helix 56	AG2	C	115	128	Right-handed alpha
Helix 57	AG3	C	150	157	Right-handed alpha
Helix 58	AG4	C	157	180	Right-handed alpha
Helix 59	AG5	C	192	218	Right-handed alpha
Helix 60	AG6	C	274	279	Right-handed alpha
Helix 61	AG7	C	295	307	Right-handed alpha
Helix 62	AG8	C	324	338	Right-handed alpha
Helix 63	AG9	C	396	399	Right-handed 310
Helix 64	AH1	C	400	405	Right-handed alpha
Helix 65	AH2	C	431	434	Right-handed 310
Helix 66	AH3	C	440	458	Right-handed alpha
Helix 67	AH4	C	484	493	Right-handed alpha
Helix 68	AH5	C	506	510	Right-handed 310
Helix 69	AH6	C	514	519	Right-handed 310
Helix 70	AH7	C	529	531	Right-handed 310
Helix 71	AH8	C	543	552	Right-handed alpha
Helix 72	AH9	C	553	558	Right-handed 310
Helix 73	AI1	C	560	566	Right-handed alpha
Helix 74	AI2	C	574	580	Right-handed 310

There are 24 sheets in PDB entry 7PVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	26	30	parallel
Strand 3	A	75	78	anti-parallel
Strand 4	A	81	84	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	132	135	parallel
Strand 3	A	109	112	parallel
Strand 4	A	252	254	parallel
Strand 5	A	427	429	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	B	182	183	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	231	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	244	248	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	391	393	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	311	314	parallel
Strand 3	A	288	291	parallel
Strand 4	A	385	388	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	363	372	anti-parallel
Strand 3	A	375	383	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	420	421	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	472	first strand
Strand 2	A	478	482	anti-parallel
Strand 3	A	534	540	anti-parallel
Strand 4	A	521	527	anti-parallel
Strand 5	A	497	503	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	26	30	parallel
Strand 3	B	75	78	anti-parallel
Strand 4	B	81	84	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	132	135	parallel
Strand 3	B	109	112	parallel
Strand 4	B	252	254	parallel
Strand 5	B	427	429	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	231	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	244	248	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	391	393	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	311	314	parallel
Strand 3	B	288	291	parallel
Strand 4	B	385	388	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	363	371	anti-parallel
Strand 3	B	376	383	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	420	421	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	478	482	anti-parallel
Strand 3	B	534	540	anti-parallel
Strand 4	B	521	527	anti-parallel
Strand 5	B	497	503	anti-parallel
Strand 6	B	583	584	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	54	first strand
Strand 2	C	26	29	parallel
Strand 3	C	75	78	anti-parallel
Strand 4	C	81	84	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	132	135	parallel
Strand 3	C	109	112	parallel
Strand 4	C	252	254	parallel
Strand 5	C	427	429	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	231	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	244	248	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	260	first strand
Strand 2	C	392	393	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	343	first strand
Strand 2	C	311	314	parallel
Strand 3	C	288	291	parallel
Strand 4	C	385	388	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	363	366	anti-parallel
Strand 3	C	381	383	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	472	first strand
Strand 2	C	478	482	anti-parallel
Strand 3	C	534	540	anti-parallel
Strand 4	C	521	527	anti-parallel
Strand 5	C	497	503	anti-parallel
Strand 6	C	583	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVJ