Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PVK entry

There are 2 chains in PDB entry 7PVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 6	LYS 518
B	ARG 6	ALA 103

There are105 helices in PDB entry 7PVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	19	Right-handed 310
Helix 2	AA2	A	20	30	Right-handed alpha
Helix 3	AA3	A	39	50	Right-handed alpha
Helix 4	AA4	A	65	77	Right-handed alpha
Helix 5	AA5	A	90	100	Right-handed alpha
Helix 6	AA6	A	111	124	Right-handed alpha
Helix 7	AA7	A	124	150	Right-handed alpha
Helix 8	AA8	A	153	171	Right-handed alpha
Helix 9	AA9	A	175	207	Right-handed alpha
Helix 10	AB1	A	214	216	Right-handed 310
Helix 11	AB2	A	217	223	Right-handed alpha
Helix 12	AB3	A	223	229	Right-handed alpha
Helix 13	AB4	A	242	255	Right-handed alpha
Helix 14	AB5	A	274	282	Right-handed alpha
Helix 15	AB6	A	284	292	Right-handed alpha
Helix 16	AB7	A	308	320	Right-handed alpha
Helix 17	AB8	A	333	343	Right-handed alpha
Helix 18	AB9	A	344	348	Right-handed 310
Helix 19	AC1	A	358	370	Right-handed alpha
Helix 20	AC2	A	370	377	Right-handed alpha
Helix 21	AC3	A	379	394	Right-handed alpha
Helix 22	AC4	A	395	406	Right-handed alpha
Helix 23	AC5	A	486	495	Right-handed alpha
Helix 24	AC6	A	504	508	Right-handed alpha
Helix 25	AC7	B	16	19	Right-handed 310
Helix 26	AC8	B	20	30	Right-handed alpha
Helix 27	AC9	B	39	50	Right-handed alpha
Helix 28	AD1	B	65	77	Right-handed alpha
Helix 29	AD2	B	90	100	Right-handed alpha
Helix 30	AD3	B	111	124	Right-handed alpha
Helix 31	AD4	B	124	150	Right-handed alpha
Helix 32	AD5	B	153	171	Right-handed alpha
Helix 33	AD6	B	175	207	Right-handed alpha
Helix 34	AD7	B	214	216	Right-handed 310
Helix 35	AD8	B	217	223	Right-handed alpha
Helix 36	AD9	B	223	229	Right-handed alpha
Helix 37	AE1	B	242	255	Right-handed alpha
Helix 38	AE2	B	274	282	Right-handed alpha
Helix 39	AE3	B	284	292	Right-handed alpha
Helix 40	AE4	B	293	296	Right-handed 310
Helix 41	AE5	B	308	320	Right-handed alpha
Helix 42	AE6	B	333	343	Right-handed alpha
Helix 43	AE7	B	344	350	Right-handed 310
Helix 44	AE8	B	358	370	Right-handed alpha
Helix 45	AE9	B	370	377	Right-handed alpha
Helix 46	AF1	B	379	394	Right-handed alpha
Helix 47	AF2	B	394	406	Right-handed alpha
Helix 48	AF3	B	449	452	Right-handed 310
Helix 49	AF4	B	457	462	Right-handed 310
Helix 50	AF5	B	486	495	Right-handed alpha
Helix 51	AF6	B	504	508	Right-handed alpha
Helix 52	AF7	C	16	19	Right-handed 310
Helix 53	AF8	C	20	30	Right-handed alpha
Helix 54	AF9	C	39	50	Right-handed alpha
Helix 55	AG1	C	65	77	Right-handed alpha
Helix 56	AG2	C	90	100	Right-handed alpha
Helix 57	AG3	C	111	122	Right-handed alpha
Helix 58	AG4	C	124	150	Right-handed alpha
Helix 59	AG5	C	153	171	Right-handed alpha
Helix 60	AG6	C	172	174	Right-handed 310
Helix 61	AG7	C	175	207	Right-handed alpha
Helix 62	AG8	C	208	211	Right-handed 310
Helix 63	AG9	C	214	216	Right-handed 310
Helix 64	AH1	C	217	223	Right-handed alpha
Helix 65	AH2	C	223	229	Right-handed alpha
Helix 66	AH3	C	242	255	Right-handed alpha
Helix 67	AH4	C	271	282	Right-handed alpha
Helix 68	AH5	C	284	292	Right-handed alpha
Helix 69	AH6	C	308	320	Right-handed alpha
Helix 70	AH7	C	333	343	Right-handed alpha
Helix 71	AH8	C	344	348	Right-handed 310
Helix 72	AH9	C	358	370	Right-handed alpha
Helix 73	AI1	C	370	377	Right-handed alpha
Helix 74	AI2	C	379	394	Right-handed alpha
Helix 75	AI3	C	395	406	Right-handed alpha
Helix 76	AI4	C	448	452	Right-handed 310
Helix 77	AI5	C	457	462	Right-handed 310
Helix 78	AI6	C	486	495	Right-handed alpha
Helix 79	AI7	C	504	508	Right-handed alpha
Helix 80	AI8	D	20	29	Right-handed alpha
Helix 81	AI9	D	39	50	Right-handed alpha
Helix 82	AJ1	D	65	77	Right-handed alpha
Helix 83	AJ2	D	90	100	Right-handed alpha
Helix 84	AJ3	D	111	124	Right-handed alpha
Helix 85	AJ4	D	124	148	Right-handed alpha
Helix 86	AJ5	D	153	171	Right-handed alpha
Helix 87	AJ6	D	172	174	Right-handed 310
Helix 88	AJ7	D	175	207	Right-handed alpha
Helix 89	AJ8	D	214	216	Right-handed 310
Helix 90	AJ9	D	217	223	Right-handed alpha
Helix 91	AK1	D	223	229	Right-handed alpha
Helix 92	AK2	D	242	255	Right-handed alpha
Helix 93	AK3	D	274	282	Right-handed alpha
Helix 94	AK4	D	284	292	Right-handed alpha
Helix 95	AK5	D	308	320	Right-handed alpha
Helix 96	AK6	D	333	343	Right-handed alpha
Helix 97	AK7	D	344	350	Right-handed 310
Helix 98	AK8	D	358	370	Right-handed alpha
Helix 99	AK9	D	370	377	Right-handed alpha
Helix 100	AL1	D	379	394	Right-handed alpha
Helix 101	AL2	D	395	406	Right-handed alpha
Helix 102	AL3	D	448	452	Right-handed 310
Helix 103	AL4	D	457	462	Right-handed 310
Helix 104	AL5	D	486	495	Right-handed alpha
Helix 105	AL6	D	504	508	Right-handed alpha

There are 23 sheets in PDB entry 7PVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	9	13	parallel
Strand 3	A	54	57	parallel
Strand 4	A	82	86	parallel
Strand 5	A	104	107	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	509	517	anti-parallel
Strand 3	A	263	265	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	260	first strand
Strand 2	A	509	517	anti-parallel
Strand 3	A	409	413	anti-parallel
Strand 4	A	233	238	parallel
Strand 5	A	352	357	parallel
Strand 6	A	326	331	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	498	499	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	426	first strand
Strand 2	A	479	482	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	442	first strand
Strand 2	A	471	474	anti-parallel
Strand 3	A	453	455	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	37	first strand
Strand 2	B	9	13	parallel
Strand 3	B	54	57	parallel
Strand 4	B	82	86	parallel
Strand 5	B	104	107	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	509	517	anti-parallel
Strand 3	B	263	265	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	509	517	anti-parallel
Strand 3	B	409	413	anti-parallel
Strand 4	B	233	238	parallel
Strand 5	B	352	357	parallel
Strand 6	B	326	331	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	498	499	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	447	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	479	482	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	442	first strand
Strand 2	B	471	474	anti-parallel
Strand 3	B	453	455	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	9	13	parallel
Strand 3	C	54	57	parallel
Strand 4	C	82	86	parallel
Strand 5	C	104	107	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	509	517	anti-parallel
Strand 3	C	263	265	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	260	first strand
Strand 2	C	509	517	anti-parallel
Strand 3	C	409	413	anti-parallel
Strand 4	C	233	238	parallel
Strand 5	C	352	357	parallel
Strand 6	C	326	331	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	420	first strand
Strand 2	C	498	499	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	426	first strand
Strand 2	C	479	482	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	442	first strand
Strand 2	C	471	474	anti-parallel
Strand 3	C	453	455	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	9	13	parallel
Strand 3	D	54	57	parallel
Strand 4	D	82	86	parallel
Strand 5	D	104	107	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	265	first strand
Strand 2	D	509	517	anti-parallel
Strand 3	D	409	413	anti-parallel
Strand 4	D	233	238	parallel
Strand 5	D	352	357	parallel
Strand 6	D	326	331	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	420	first strand
Strand 2	D	498	499	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	426	first strand
Strand 2	D	479	482	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	439	441	first strand
Strand 2	D	472	474	anti-parallel
Strand 3	D	453	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVK