Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PVN entry

There are 6 chains in PDB entry 7PVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 35	GLN 177
A	PRO 179	LYS 310
A	LEU 312	GLY 346
A	GLN 348	LEU 413
A	GLN 415	GLU 432
A	GLU 434	LYS 672

There are 87 helices in PDB entry 7PVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	52	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	70	84	Right-handed alpha
Helix 4	AA4	A	97	104	Right-handed alpha
Helix 5	AA5	A	108	115	Right-handed alpha
Helix 6	AA6	A	117	130	Right-handed alpha
Helix 7	AA7	A	148	154	Right-handed 310
Helix 8	AA8	A	163	177	Right-handed alpha
Helix 9	AA9	A	253	257	Right-handed 310
Helix 10	AB1	A	301	308	Right-handed alpha
Helix 11	AB2	A	320	340	Right-handed alpha
Helix 12	AB3	A	347	365	Right-handed alpha
Helix 13	AB4	A	372	383	Right-handed alpha
Helix 14	AB5	A	387	408	Right-handed alpha
Helix 15	AB6	A	421	427	Right-handed alpha
Helix 16	AB7	A	432	437	Right-handed 310
Helix 17	AB8	A	443	451	Right-handed alpha
Helix 18	AB9	A	451	460	Right-handed alpha
Helix 19	AC1	A	469	483	Right-handed alpha
Helix 20	AC2	A	503	508	Right-handed 310
Helix 21	AC3	A	513	517	Right-handed 310
Helix 22	AC4	A	520	533	Right-handed alpha
Helix 23	AC5	A	546	550	Right-handed 310
Helix 24	AC6	A	554	561	Right-handed alpha
Helix 25	AC7	A	570	585	Right-handed alpha
Helix 26	AC8	A	610	614	Right-handed 310
Helix 27	AC9	A	623	629	Right-handed alpha
Helix 28	AD1	A	633	650	Right-handed alpha
Helix 29	AD2	A	650	663	Right-handed alpha
Helix 30	AD3	A	665	676	Right-handed alpha
Helix 31	AD4	A	681	691	Right-handed alpha
Helix 32	AD5	A	695	712	Right-handed alpha
Helix 33	AD6	A	712	722	Right-handed alpha
Helix 34	AD7	A	751	769	Right-handed alpha
Helix 35	AD8	A	774	779	Right-handed alpha
Helix 36	AD9	A	779	790	Right-handed alpha
Helix 37	AE1	A	819	834	Right-handed alpha
Helix 38	AE2	A	857	874	Right-handed alpha
Helix 39	AE3	A	879	889	Right-handed alpha
Helix 40	AE4	A	894	914	Right-handed alpha
Helix 41	AE5	A	967	980	Right-handed alpha
Helix 42	AE6	A	1000	1007	Right-handed alpha
Helix 43	AE7	A	1008	1013	Right-handed alpha
Helix 44	AE8	B	40	52	Right-handed alpha
Helix 45	AE9	B	52	61	Right-handed alpha
Helix 46	AF1	B	70	84	Right-handed alpha
Helix 47	AF2	B	99	104	Right-handed alpha
Helix 48	AF3	B	108	115	Right-handed alpha
Helix 49	AF4	B	117	130	Right-handed alpha
Helix 50	AF5	B	148	154	Right-handed 310
Helix 51	AF6	B	163	177	Right-handed alpha
Helix 52	AF7	B	253	257	Right-handed 310
Helix 53	AF8	B	301	308	Right-handed alpha
Helix 54	AF9	B	320	340	Right-handed alpha
Helix 55	AG1	B	347	365	Right-handed alpha
Helix 56	AG2	B	372	383	Right-handed alpha
Helix 57	AG3	B	387	408	Right-handed alpha
Helix 58	AG4	B	421	427	Right-handed alpha
Helix 59	AG5	B	432	437	Right-handed 310
Helix 60	AG6	B	443	451	Right-handed alpha
Helix 61	AG7	B	451	460	Right-handed alpha
Helix 62	AG8	B	469	483	Right-handed alpha
Helix 63	AG9	B	503	508	Right-handed 310
Helix 64	AH1	B	513	517	Right-handed 310
Helix 65	AH2	B	520	533	Right-handed alpha
Helix 66	AH3	B	546	551	Right-handed 310
Helix 67	AH4	B	554	561	Right-handed alpha
Helix 68	AH5	B	570	585	Right-handed alpha
Helix 69	AH6	B	610	614	Right-handed 310
Helix 70	AH7	B	623	629	Right-handed alpha
Helix 71	AH8	B	633	650	Right-handed alpha
Helix 72	AH9	B	650	663	Right-handed alpha
Helix 73	AI1	B	665	676	Right-handed alpha
Helix 74	AI2	B	681	691	Right-handed alpha
Helix 75	AI3	B	695	712	Right-handed alpha
Helix 76	AI4	B	712	722	Right-handed alpha
Helix 77	AI5	B	751	769	Right-handed alpha
Helix 78	AI6	B	774	779	Right-handed alpha
Helix 79	AI7	B	779	790	Right-handed alpha
Helix 80	AI8	B	818	834	Right-handed alpha
Helix 81	AI9	B	839	843	Right-handed 310
Helix 82	AJ1	B	857	874	Right-handed alpha
Helix 83	AJ2	B	879	889	Right-handed alpha
Helix 84	AJ3	B	894	914	Right-handed alpha
Helix 85	AJ4	B	967	980	Right-handed alpha
Helix 86	AJ5	B	1000	1007	Right-handed alpha
Helix 87	AJ6	B	1008	1014	Right-handed alpha

There are 13 sheets in PDB entry 7PVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	87	91	parallel
Strand 3	A	63	67	parallel
Strand 4	A	156	159	parallel
Strand 5	A	182	189	parallel
Strand 6	A	192	198	anti-parallel
Strand 7	A	416	417	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	295	297	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	244	250	anti-parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	270	272	anti-parallel
Strand 7	A	264	267	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	492	496	parallel
Strand 3	A	462	466	parallel
Strand 4	A	563	566	parallel
Strand 5	A	588	594	parallel
Strand 6	A	597	603	anti-parallel
Strand 7	A	922	927	anti-parallel
Strand 8	A	932	937	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1043	1046	parallel
Strand 3	A	1021	1028	anti-parallel
Strand 4	A	985	988	anti-parallel
Strand 5	A	991	994	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1043	1046	parallel
Strand 3	A	1021	1028	anti-parallel
Strand 4	A	1038	1039	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	87	91	parallel
Strand 3	B	63	66	parallel
Strand 4	B	156	160	parallel
Strand 5	B	182	189	parallel
Strand 6	B	192	198	anti-parallel
Strand 7	B	416	417	anti-parallel
Strand 8	B	311	312	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	295	297	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	262	first strand
Strand 2	B	244	250	anti-parallel
Strand 3	B	285	291	anti-parallel
Strand 4	B	215	221	anti-parallel
Strand 5	B	229	231	anti-parallel
Strand 6	B	270	272	anti-parallel
Strand 7	B	264	267	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	492	496	parallel
Strand 3	B	462	466	parallel
Strand 4	B	563	566	parallel
Strand 5	B	588	594	parallel
Strand 6	B	597	603	anti-parallel
Strand 7	B	922	927	anti-parallel
Strand 8	B	932	937	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	945	first strand
Strand 2	B	951	952	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	983	988	anti-parallel
Strand 5	B	991	994	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	1038	1039	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PVN