Analysis of interatomic Contacts of Structural Units in PDB entry:
7PXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PXF entry

There are 4 chains in PDB entry 7PXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 44	GLY 1145
B	LEU 44	GLY 1145
C	LEU 44	GLY 1145
D	LEU 44	GLY 1145

There are184 helices in PDB entry 7PXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	67	Right-handed alpha
Helix 2	AA2	A	70	75	Right-handed 310
Helix 3	AA3	A	107	119	Right-handed alpha
Helix 4	AA4	A	126	149	Right-handed alpha
Helix 5	AA5	A	164	177	Right-handed alpha
Helix 6	AA6	A	177	185	Right-handed alpha
Helix 7	AA7	A	190	194	Right-handed 310
Helix 8	AA8	A	195	203	Right-handed alpha
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	221	230	Right-handed 310
Helix 11	AB2	A	231	239	Right-handed alpha
Helix 12	AB3	A	244	274	Right-handed alpha
Helix 13	AB4	A	287	300	Right-handed alpha
Helix 14	AB5	A	311	342	Right-handed alpha
Helix 15	AB6	A	366	378	Right-handed alpha
Helix 16	AB7	A	398	408	Right-handed alpha
Helix 17	AB8	A	421	428	Right-handed alpha
Helix 18	AB9	A	429	433	Right-handed 310
Helix 19	AC1	A	446	465	Right-handed alpha
Helix 20	AC2	A	476	478	Right-handed 310
Helix 21	AC3	A	479	485	Right-handed alpha
Helix 22	AC4	A	500	514	Right-handed alpha
Helix 23	AC5	A	516	525	Right-handed alpha
Helix 24	AC6	A	537	548	Right-handed alpha
Helix 25	AC7	A	557	561	Right-handed 310
Helix 26	AC8	A	564	575	Right-handed alpha
Helix 27	AC9	A	617	626	Right-handed alpha
Helix 28	AD1	A	794	796	Right-handed 310
Helix 29	AD2	A	800	807	Right-handed alpha
Helix 30	AD3	A	828	836	Right-handed alpha
Helix 31	AD4	A	853	859	Right-handed alpha
Helix 32	AD5	A	860	865	Right-handed 310
Helix 33	AD6	A	879	887	Right-handed alpha
Helix 34	AD7	A	888	891	Right-handed 310
Helix 35	AD8	A	907	911	Right-handed 310
Helix 36	AD9	A	912	924	Right-handed alpha
Helix 37	AE1	A	960	964	Right-handed 310
Helix 38	AE2	A	975	979	Right-handed 310
Helix 39	AE3	A	990	993	Right-handed 310
Helix 40	AE4	A	994	999	Right-handed alpha
Helix 41	AE5	A	1005	1018	Right-handed alpha
Helix 42	AE6	A	1019	1030	Right-handed alpha
Helix 43	AE7	A	1034	1042	Right-handed alpha
Helix 44	AE8	A	1056	1061	Right-handed 310
Helix 45	AE9	A	1073	1079	Right-handed 310
Helix 46	AF1	A	1083	1095	Right-handed alpha
Helix 47	AF2	B	48	67	Right-handed alpha
Helix 48	AF3	B	70	75	Right-handed 310
Helix 49	AF4	B	107	119	Right-handed alpha
Helix 50	AF5	B	126	149	Right-handed alpha
Helix 51	AF6	B	164	177	Right-handed alpha
Helix 52	AF7	B	177	185	Right-handed alpha
Helix 53	AF8	B	190	194	Right-handed 310
Helix 54	AF9	B	195	203	Right-handed alpha
Helix 55	AG1	B	204	214	Right-handed alpha
Helix 56	AG2	B	221	230	Right-handed 310
Helix 57	AG3	B	231	239	Right-handed alpha
Helix 58	AG4	B	244	274	Right-handed alpha
Helix 59	AG5	B	287	300	Right-handed alpha
Helix 60	AG6	B	311	342	Right-handed alpha
Helix 61	AG7	B	366	378	Right-handed alpha
Helix 62	AG8	B	398	408	Right-handed alpha
Helix 63	AG9	B	421	428	Right-handed alpha
Helix 64	AH1	B	429	433	Right-handed 310
Helix 65	AH2	B	446	465	Right-handed alpha
Helix 66	AH3	B	476	478	Right-handed 310
Helix 67	AH4	B	479	485	Right-handed alpha
Helix 68	AH5	B	500	514	Right-handed alpha
Helix 69	AH6	B	516	525	Right-handed alpha
Helix 70	AH7	B	537	548	Right-handed alpha
Helix 71	AH8	B	557	561	Right-handed 310
Helix 72	AH9	B	564	575	Right-handed alpha
Helix 73	AI1	B	617	626	Right-handed alpha
Helix 74	AI2	B	794	796	Right-handed 310
Helix 75	AI3	B	800	807	Right-handed alpha
Helix 76	AI4	B	828	836	Right-handed alpha
Helix 77	AI5	B	853	859	Right-handed alpha
Helix 78	AI6	B	860	865	Right-handed 310
Helix 79	AI7	B	879	887	Right-handed alpha
Helix 80	AI8	B	888	891	Right-handed 310
Helix 81	AI9	B	907	911	Right-handed 310
Helix 82	AJ1	B	912	924	Right-handed alpha
Helix 83	AJ2	B	960	964	Right-handed 310
Helix 84	AJ3	B	975	979	Right-handed 310
Helix 85	AJ4	B	990	993	Right-handed 310
Helix 86	AJ5	B	994	999	Right-handed alpha
Helix 87	AJ6	B	1005	1018	Right-handed alpha
Helix 88	AJ7	B	1019	1030	Right-handed alpha
Helix 89	AJ8	B	1034	1042	Right-handed alpha
Helix 90	AJ9	B	1056	1061	Right-handed 310
Helix 91	AK1	B	1073	1079	Right-handed 310
Helix 92	AK2	B	1083	1095	Right-handed alpha
Helix 93	AK3	C	48	67	Right-handed alpha
Helix 94	AK4	C	70	75	Right-handed 310
Helix 95	AK5	C	107	119	Right-handed alpha
Helix 96	AK6	C	126	149	Right-handed alpha
Helix 97	AK7	C	164	177	Right-handed alpha
Helix 98	AK8	C	177	185	Right-handed alpha
Helix 99	AK9	C	190	194	Right-handed 310
Helix 100	AL1	C	195	203	Right-handed alpha
Helix 101	AL2	C	204	214	Right-handed alpha
Helix 102	AL3	C	221	230	Right-handed 310
Helix 103	AL4	C	231	239	Right-handed alpha
Helix 104	AL5	C	244	274	Right-handed alpha
Helix 105	AL6	C	287	300	Right-handed alpha
Helix 106	AL7	C	311	342	Right-handed alpha
Helix 107	AL8	C	366	378	Right-handed alpha
Helix 108	AL9	C	398	408	Right-handed alpha
Helix 109	AM1	C	421	428	Right-handed alpha
Helix 110	AM2	C	429	433	Right-handed 310
Helix 111	AM3	C	446	465	Right-handed alpha
Helix 112	AM4	C	476	478	Right-handed 310
Helix 113	AM5	C	479	485	Right-handed alpha
Helix 114	AM6	C	500	514	Right-handed alpha
Helix 115	AM7	C	516	525	Right-handed alpha
Helix 116	AM8	C	537	548	Right-handed alpha
Helix 117	AM9	C	557	561	Right-handed 310
Helix 118	AN1	C	564	575	Right-handed alpha
Helix 119	AN2	C	617	626	Right-handed alpha
Helix 120	AN3	C	794	796	Right-handed 310
Helix 121	AN4	C	800	807	Right-handed alpha
Helix 122	AN5	C	828	836	Right-handed alpha
Helix 123	AN6	C	853	859	Right-handed alpha
Helix 124	AN7	C	860	865	Right-handed 310
Helix 125	AN8	C	879	887	Right-handed alpha
Helix 126	AN9	C	888	891	Right-handed 310
Helix 127	AO1	C	907	911	Right-handed 310
Helix 128	AO2	C	912	924	Right-handed alpha
Helix 129	AO3	C	960	964	Right-handed 310
Helix 130	AO4	C	975	979	Right-handed 310
Helix 131	AO5	C	990	993	Right-handed 310
Helix 132	AO6	C	994	999	Right-handed alpha
Helix 133	AO7	C	1005	1018	Right-handed alpha
Helix 134	AO8	C	1019	1030	Right-handed alpha
Helix 135	AO9	C	1034	1042	Right-handed alpha
Helix 136	AP1	C	1056	1061	Right-handed 310
Helix 137	AP2	C	1073	1079	Right-handed 310
Helix 138	AP3	C	1083	1095	Right-handed alpha
Helix 139	AP4	D	48	67	Right-handed alpha
Helix 140	AP5	D	70	75	Right-handed 310
Helix 141	AP6	D	107	119	Right-handed alpha
Helix 142	AP7	D	126	149	Right-handed alpha
Helix 143	AP8	D	164	177	Right-handed alpha
Helix 144	AP9	D	177	185	Right-handed alpha
Helix 145	AQ1	D	190	194	Right-handed 310
Helix 146	AQ2	D	195	203	Right-handed alpha
Helix 147	AQ3	D	204	214	Right-handed alpha
Helix 148	AQ4	D	221	230	Right-handed 310
Helix 149	AQ5	D	231	239	Right-handed alpha
Helix 150	AQ6	D	244	274	Right-handed alpha
Helix 151	AQ7	D	287	300	Right-handed alpha
Helix 152	AQ8	D	311	342	Right-handed alpha
Helix 153	AQ9	D	366	378	Right-handed alpha
Helix 154	AR1	D	398	408	Right-handed alpha
Helix 155	AR2	D	421	428	Right-handed alpha
Helix 156	AR3	D	429	433	Right-handed 310
Helix 157	AR4	D	446	465	Right-handed alpha
Helix 158	AR5	D	476	478	Right-handed 310
Helix 159	AR6	D	479	485	Right-handed alpha
Helix 160	AR7	D	500	514	Right-handed alpha
Helix 161	AR8	D	516	525	Right-handed alpha
Helix 162	AR9	D	537	548	Right-handed alpha
Helix 163	AS1	D	557	561	Right-handed 310
Helix 164	AS2	D	564	575	Right-handed alpha
Helix 165	AS3	D	617	626	Right-handed alpha
Helix 166	AS4	D	794	796	Right-handed 310
Helix 167	AS5	D	800	807	Right-handed alpha
Helix 168	AS6	D	828	836	Right-handed alpha
Helix 169	AS7	D	853	859	Right-handed alpha
Helix 170	AS8	D	860	865	Right-handed 310
Helix 171	AS9	D	879	887	Right-handed alpha
Helix 172	AT1	D	888	891	Right-handed 310
Helix 173	AT2	D	907	911	Right-handed 310
Helix 174	AT3	D	912	924	Right-handed alpha
Helix 175	AT4	D	960	964	Right-handed 310
Helix 176	AT5	D	975	979	Right-handed 310
Helix 177	AT6	D	990	993	Right-handed 310
Helix 178	AT7	D	994	999	Right-handed alpha
Helix 179	AT8	D	1005	1018	Right-handed alpha
Helix 180	AT9	D	1019	1030	Right-handed alpha
Helix 181	AU1	D	1034	1042	Right-handed alpha
Helix 182	AU2	D	1056	1061	Right-handed 310
Helix 183	AU3	D	1073	1079	Right-handed 310
Helix 184	AU4	D	1083	1095	Right-handed alpha

There are 24 sheets in PDB entry 7PXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	216	218	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	416	first strand
Strand 2	A	388	393	parallel
Strand 3	A	358	363	parallel
Strand 4	A	435	439	parallel
Strand 5	A	469	474	parallel
Strand 6	A	496	499	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	555	first strand
Strand 2	A	610	615	anti-parallel
Strand 3	A	579	585	anti-parallel
Strand 4	A	595	598	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	1049	1050	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	799	first strand
Strand 2	A	870	874	parallel
Strand 3	A	848	852	parallel
Strand 4	A	813	818	parallel
Strand 5	A	893	898	parallel
Strand 6	A	966	970	parallel
Strand 7	A	1002	1004	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1069	first strand
Strand 2	A	1135	1140	anti-parallel
Strand 3	A	1099	1105	anti-parallel
Strand 4	A	1118	1122	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	156	first strand
Strand 2	B	216	218	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	416	first strand
Strand 2	B	388	393	parallel
Strand 3	B	358	363	parallel
Strand 4	B	435	439	parallel
Strand 5	B	469	474	parallel
Strand 6	B	496	499	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	555	first strand
Strand 2	B	610	615	anti-parallel
Strand 3	B	579	585	anti-parallel
Strand 4	B	595	598	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	781	first strand
Strand 2	B	1049	1050	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	799	first strand
Strand 2	B	870	874	parallel
Strand 3	B	848	852	parallel
Strand 4	B	813	818	parallel
Strand 5	B	893	898	parallel
Strand 6	B	966	970	parallel
Strand 7	B	1002	1004	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1064	1069	first strand
Strand 2	B	1135	1140	anti-parallel
Strand 3	B	1099	1105	anti-parallel
Strand 4	B	1118	1122	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	216	218	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	416	first strand
Strand 2	C	388	393	parallel
Strand 3	C	358	363	parallel
Strand 4	C	435	439	parallel
Strand 5	C	469	474	parallel
Strand 6	C	496	499	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	555	first strand
Strand 2	C	610	615	anti-parallel
Strand 3	C	579	585	anti-parallel
Strand 4	C	595	598	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	780	781	first strand
Strand 2	C	1049	1050	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	799	first strand
Strand 2	C	870	874	parallel
Strand 3	C	848	852	parallel
Strand 4	C	813	818	parallel
Strand 5	C	893	898	parallel
Strand 6	C	966	970	parallel
Strand 7	C	1002	1004	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1064	1069	first strand
Strand 2	C	1135	1140	anti-parallel
Strand 3	C	1099	1105	anti-parallel
Strand 4	C	1118	1122	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	156	first strand
Strand 2	D	216	218	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	416	first strand
Strand 2	D	388	393	parallel
Strand 3	D	358	363	parallel
Strand 4	D	435	439	parallel
Strand 5	D	469	474	parallel
Strand 6	D	496	499	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	555	first strand
Strand 2	D	610	615	anti-parallel
Strand 3	D	579	585	anti-parallel
Strand 4	D	595	598	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	780	781	first strand
Strand 2	D	1049	1050	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	798	799	first strand
Strand 2	D	870	874	parallel
Strand 3	D	848	852	parallel
Strand 4	D	813	818	parallel
Strand 5	D	893	898	parallel
Strand 6	D	966	970	parallel
Strand 7	D	1002	1004	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1069	first strand
Strand 2	D	1135	1140	anti-parallel
Strand 3	D	1099	1105	anti-parallel
Strand 4	D	1118	1122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PXF