Analysis of interatomic Contacts of Structural Units in PDB entry:
7PY3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PY3 entry

There are 9 chains in PDB entry 7PY3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	LEU 234
B	THR 6	GLU 329
C	VAL 2	GLU 1342
D	GLU 16	ALA 1375
E	ALA 2	ARG 91
F	MET 1	ALA 495
N	C 9	A 38
T	T 2	G 31
R	U 4	G 14

There are130 helices in PDB entry 7PY3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	156	161	Right-handed 310
Helix 5	AA5	A	212	229	Right-handed alpha
Helix 6	AA6	A	230	232	Right-handed 310
Helix 7	AA7	B	34	48	Right-handed alpha
Helix 8	AA8	B	77	87	Right-handed alpha
Helix 9	AA9	B	111	115	Right-handed 310
Helix 10	AB1	B	212	228	Right-handed alpha
Helix 11	AB2	B	256	260	Right-handed 310
Helix 12	AB3	B	263	267	Right-handed 310
Helix 13	AB4	B	277	283	Right-handed alpha
Helix 14	AB5	B	296	308	Right-handed alpha
Helix 15	AB6	B	323	327	Right-handed 310
Helix 16	AB7	C	31	40	Right-handed alpha
Helix 17	AB8	C	48	57	Right-handed alpha
Helix 18	AB9	C	82	89	Right-handed alpha
Helix 19	AC1	C	206	213	Right-handed alpha
Helix 20	AC2	C	216	223	Right-handed alpha
Helix 21	AC3	C	242	247	Right-handed alpha
Helix 22	AC4	C	270	280	Right-handed alpha
Helix 23	AC5	C	288	294	Right-handed 310
Helix 24	AC6	C	318	328	Right-handed alpha
Helix 25	AC7	C	345	354	Right-handed alpha
Helix 26	AC8	C	358	371	Right-handed alpha
Helix 27	AC9	C	377	390	Right-handed alpha
Helix 28	AD1	C	398	409	Right-handed alpha
Helix 29	AD2	C	422	437	Right-handed alpha
Helix 30	AD3	C	455	482	Right-handed alpha
Helix 31	AD4	C	488	493	Right-handed alpha
Helix 32	AD5	C	495	509	Right-handed alpha
Helix 33	AD6	C	519	527	Right-handed alpha
Helix 34	AD7	C	551	555	Right-handed 310
Helix 35	AD8	C	609	614	Right-handed alpha
Helix 36	AD9	C	648	650	Right-handed 310
Helix 37	AE1	C	670	674	Right-handed 310
Helix 38	AE2	C	675	687	Right-handed alpha
Helix 39	AE3	C	704	712	Right-handed alpha
Helix 40	AE4	C	820	825	Right-handed alpha
Helix 41	AE5	C	896	907	Right-handed alpha
Helix 42	AE6	C	942	981	Right-handed alpha
Helix 43	AE7	C	993	998	Right-handed 310
Helix 44	AE8	C	1005	1038	Right-handed alpha
Helix 45	AE9	C	1099	1101	Right-handed 310
Helix 46	AF1	C	1102	1107	Right-handed alpha
Helix 47	AF2	C	1109	1134	Right-handed alpha
Helix 48	AF3	C	1137	1150	Right-handed alpha
Helix 49	AF4	C	1160	1164	Right-handed 310
Helix 50	AF5	C	1166	1176	Right-handed alpha
Helix 51	AF6	C	1185	1189	Right-handed 310
Helix 52	AF7	C	1191	1202	Right-handed alpha
Helix 53	AF8	C	1238	1242	Right-handed 310
Helix 54	AF9	C	1262	1266	Right-handed 310
Helix 55	AG1	C	1271	1281	Right-handed alpha
Helix 56	AG2	C	1283	1293	Right-handed alpha
Helix 57	AG3	C	1297	1310	Right-handed alpha
Helix 58	AG4	C	1320	1333	Right-handed alpha
Helix 59	AG5	D	26	33	Right-handed alpha
Helix 60	AG6	D	94	100	Right-handed 310
Helix 61	AG7	D	114	119	Right-handed alpha
Helix 62	AG8	D	122	129	Right-handed alpha
Helix 63	AG9	D	132	140	Right-handed alpha
Helix 64	AH1	D	161	172	Right-handed alpha
Helix 65	AH2	D	180	192	Right-handed alpha
Helix 66	AH3	D	194	208	Right-handed alpha
Helix 67	AH4	D	210	230	Right-handed alpha
Helix 68	AH5	D	233	236	Right-handed 310
Helix 69	AH6	D	246	250	Right-handed 310
Helix 70	AH7	D	256	258	Right-handed 310
Helix 71	AH8	D	264	286	Right-handed alpha
Helix 72	AH9	D	288	308	Right-handed alpha
Helix 73	AI1	D	337	342	Right-handed alpha
Helix 74	AI2	D	370	377	Right-handed alpha
Helix 75	AI3	D	377	389	Right-handed alpha
Helix 76	AI4	D	393	403	Right-handed alpha
Helix 77	AI5	D	408	416	Right-handed alpha
Helix 78	AI6	D	430	432	Right-handed 310
Helix 79	AI7	D	453	458	Right-handed alpha
Helix 80	AI8	D	473	483	Right-handed alpha
Helix 81	AI9	D	504	514	Right-handed alpha
Helix 82	AJ1	D	529	539	Right-handed alpha
Helix 83	AJ2	D	574	581	Right-handed alpha
Helix 84	AJ3	D	588	593	Right-handed 310
Helix 85	AJ4	D	597	612	Right-handed alpha
Helix 86	AJ5	D	614	634	Right-handed alpha
Helix 87	AJ6	D	640	644	Right-handed 310
Helix 88	AJ7	D	649	670	Right-handed alpha
Helix 89	AJ8	D	674	703	Right-handed alpha
Helix 90	AJ9	D	720	728	Right-handed alpha
Helix 91	AK1	D	733	741	Right-handed alpha
Helix 92	AK2	D	768	804	Right-handed alpha
Helix 93	AK3	D	834	840	Right-handed alpha
Helix 94	AK4	D	865	876	Right-handed alpha
Helix 95	AK5	D	915	925	Right-handed alpha
Helix 96	AK6	D	926	929	Right-handed 310
Helix 97	AK7	D	1138	1146	Right-handed alpha
Helix 98	AK8	D	1216	1224	Right-handed alpha
Helix 99	AK9	D	1225	1244	Right-handed alpha
Helix 100	AL1	D	1250	1261	Right-handed alpha
Helix 101	AL2	D	1280	1289	Right-handed alpha
Helix 102	AL3	D	1308	1315	Right-handed alpha
Helix 103	AL4	D	1318	1326	Right-handed alpha
Helix 104	AL5	D	1327	1339	Right-handed alpha
Helix 105	AL6	D	1348	1354	Right-handed alpha
Helix 106	AL7	D	1361	1373	Right-handed alpha
Helix 107	AL8	E	6	13	Right-handed alpha
Helix 108	AL9	E	16	32	Right-handed alpha
Helix 109	AM1	E	45	56	Right-handed alpha
Helix 110	AM2	E	60	90	Right-handed alpha
Helix 111	AM3	F	4	10	Right-handed alpha
Helix 112	AM4	F	21	39	Right-handed alpha
Helix 113	AM5	F	70	74	Right-handed 310
Helix 114	AM6	F	76	80	Right-handed 310
Helix 115	AM7	F	103	109	Right-handed alpha
Helix 116	AM8	F	110	112	Right-handed 310
Helix 117	AM9	F	113	131	Right-handed alpha
Helix 118	AN1	F	201	206	Right-handed alpha
Helix 119	AN2	F	207	211	Right-handed 310
Helix 120	AN3	F	279	287	Right-handed alpha
Helix 121	AN4	F	314	319	Right-handed alpha
Helix 122	AN5	F	324	332	Right-handed 310
Helix 123	AN6	F	350	364	Right-handed alpha
Helix 124	AN7	F	366	371	Right-handed alpha
Helix 125	AN8	F	399	404	Right-handed alpha
Helix 126	AN9	F	409	416	Right-handed alpha
Helix 127	AO1	F	417	420	Right-handed 310
Helix 128	AO2	F	442	451	Right-handed 310
Helix 129	AO3	F	457	462	Right-handed 310
Helix 130	AO4	F	482	487	Right-handed alpha

There are 45 sheets in PDB entry 7PY3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	19	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	183	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	52	59	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	184	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	27	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	187	190	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	97	105	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	131	133	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	75	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	115	128	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	159	first strand
Strand 2	C	172	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	197	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	229	231	anti-parallel
Strand 3	C	333	334	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	636	first strand
Strand 2	C	643	646	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	750	first strand
Strand 2	C	732	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1076	1080	first strand
Strand 2	C	816	819	parallel
Strand 3	C	1096	1098	anti-parallel
Strand 4	C	798	804	parallel
Strand 5	C	1225	1232	anti-parallel
Strand 6	C	1209	1210	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	931	935	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	447	449	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	254	first strand
Strand 2	D	260	262	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	550	parallel
Strand 3	D	571	573	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	556	first strand
Strand 2	D	564	568	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	849	850	first strand
Strand 2	D	855	856	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	993	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1025	1026	first strand
Strand 2	D	1123	1124	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1050	first strand
Strand 2	D	1057	1061	anti-parallel
Strand 3	D	1106	1107	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1189	first strand
Strand 2	D	1174	1178	anti-parallel
Strand 3	D	1161	1164	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1278	1279	first strand
Strand 2	D	1263	1269	anti-parallel
Strand 3	D	1300	1304	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	49	first strand
Strand 2	F	56	61	anti-parallel
Strand 3	F	94	98	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	138	141	first strand
Strand 2	F	178	181	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	159	162	anti-parallel
Strand 3	F	194	195	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	222	first strand
Strand 2	F	237	240	anti-parallel
Strand 3	F	274	275	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PY3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PY3