Analysis of interatomic Contacts of Structural Units in PDB entry:
7PY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PY5 entry

There are 10 chains in PDB entry 7PY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	C 9	A 38
T	T 2	G 31
R	U 4	G 14
A	GLU 7	LEU 234
B	SER 4	LEU 234
C	VAL 2	GLU 1342
D	GLU 16	ARG 1373
E	ALA 2	ARG 91
G	MET 1	ARG 123
F	MET 1	ALA 495

There are130 helices in PDB entry 7PY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	156	162	Right-handed 310
Helix 5	AA5	A	212	229	Right-handed alpha
Helix 6	AA6	B	34	49	Right-handed alpha
Helix 7	AA7	B	77	88	Right-handed alpha
Helix 8	AA8	B	113	115	Right-handed 310
Helix 9	AA9	B	212	226	Right-handed alpha
Helix 10	AB1	C	4	8	Right-handed 310
Helix 11	AB2	C	31	39	Right-handed alpha
Helix 12	AB3	C	48	56	Right-handed alpha
Helix 13	AB4	C	81	89	Right-handed alpha
Helix 14	AB5	C	163	167	Right-handed 310
Helix 15	AB6	C	206	213	Right-handed alpha
Helix 16	AB7	C	216	225	Right-handed alpha
Helix 17	AB8	C	242	247	Right-handed 310
Helix 18	AB9	C	270	280	Right-handed alpha
Helix 19	AC1	C	288	293	Right-handed 310
Helix 20	AC2	C	318	327	Right-handed alpha
Helix 21	AC3	C	345	354	Right-handed alpha
Helix 22	AC4	C	358	371	Right-handed alpha
Helix 23	AC5	C	377	390	Right-handed alpha
Helix 24	AC6	C	398	408	Right-handed alpha
Helix 25	AC7	C	421	438	Right-handed alpha
Helix 26	AC8	C	447	449	Right-handed 310
Helix 27	AC9	C	455	481	Right-handed alpha
Helix 28	AD1	C	494	508	Right-handed alpha
Helix 29	AD2	C	519	527	Right-handed alpha
Helix 30	AD3	C	662	667	Right-handed alpha
Helix 31	AD4	C	670	674	Right-handed 310
Helix 32	AD5	C	675	687	Right-handed alpha
Helix 33	AD6	C	704	712	Right-handed alpha
Helix 34	AD7	C	820	825	Right-handed alpha
Helix 35	AD8	C	858	863	Right-handed alpha
Helix 36	AD9	C	896	907	Right-handed alpha
Helix 37	AE1	C	942	980	Right-handed alpha
Helix 38	AE2	C	1005	1038	Right-handed alpha
Helix 39	AE3	C	1081	1085	Right-handed 310
Helix 40	AE4	C	1099	1103	Right-handed 310
Helix 41	AE5	C	1109	1134	Right-handed alpha
Helix 42	AE6	C	1137	1151	Right-handed alpha
Helix 43	AE7	C	1160	1164	Right-handed 310
Helix 44	AE8	C	1165	1177	Right-handed alpha
Helix 45	AE9	C	1191	1202	Right-handed alpha
Helix 46	AF1	C	1271	1281	Right-handed alpha
Helix 47	AF2	C	1284	1291	Right-handed alpha
Helix 48	AF3	C	1297	1309	Right-handed alpha
Helix 49	AF4	C	1320	1333	Right-handed alpha
Helix 50	AF5	D	26	34	Right-handed alpha
Helix 51	AF6	D	58	63	Right-handed alpha
Helix 52	AF7	D	77	81	Right-handed 310
Helix 53	AF8	D	94	100	Right-handed 310
Helix 54	AF9	D	122	129	Right-handed alpha
Helix 55	AG1	D	131	140	Right-handed alpha
Helix 56	AG2	D	161	172	Right-handed alpha
Helix 57	AG3	D	180	192	Right-handed alpha
Helix 58	AG4	D	193	208	Right-handed alpha
Helix 59	AG5	D	210	230	Right-handed alpha
Helix 60	AG6	D	233	236	Right-handed 310
Helix 61	AG7	D	246	250	Right-handed 310
Helix 62	AG8	D	263	285	Right-handed alpha
Helix 63	AG9	D	288	308	Right-handed alpha
Helix 64	AH1	D	326	332	Right-handed alpha
Helix 65	AH2	D	336	342	Right-handed alpha
Helix 66	AH3	D	370	377	Right-handed alpha
Helix 67	AH4	D	377	389	Right-handed alpha
Helix 68	AH5	D	393	402	Right-handed alpha
Helix 69	AH6	D	407	417	Right-handed alpha
Helix 70	AH7	D	430	432	Right-handed 310
Helix 71	AH8	D	450	458	Right-handed alpha
Helix 72	AH9	D	473	484	Right-handed alpha
Helix 73	AI1	D	504	514	Right-handed alpha
Helix 74	AI2	D	529	539	Right-handed alpha
Helix 75	AI3	D	574	581	Right-handed alpha
Helix 76	AI4	D	588	592	Right-handed 310
Helix 77	AI5	D	597	610	Right-handed alpha
Helix 78	AI6	D	614	634	Right-handed alpha
Helix 79	AI7	D	649	670	Right-handed alpha
Helix 80	AI8	D	674	703	Right-handed alpha
Helix 81	AI9	D	720	728	Right-handed alpha
Helix 82	AJ1	D	733	742	Right-handed alpha
Helix 83	AJ2	D	768	802	Right-handed alpha
Helix 84	AJ3	D	803	807	Right-handed 310
Helix 85	AJ4	D	834	838	Right-handed 310
Helix 86	AJ5	D	865	875	Right-handed alpha
Helix 87	AJ6	D	884	888	Right-handed 310
Helix 88	AJ7	D	895	900	Right-handed alpha
Helix 89	AJ8	D	914	925	Right-handed alpha
Helix 90	AJ9	D	926	928	Right-handed 310
Helix 91	AK1	D	1068	1073	Right-handed alpha
Helix 92	AK2	D	1137	1147	Right-handed alpha
Helix 93	AK3	D	1216	1225	Right-handed alpha
Helix 94	AK4	D	1226	1244	Right-handed alpha
Helix 95	AK5	D	1249	1261	Right-handed alpha
Helix 96	AK6	D	1282	1295	Right-handed alpha
Helix 97	AK7	D	1308	1315	Right-handed alpha
Helix 98	AK8	D	1318	1324	Right-handed alpha
Helix 99	AK9	D	1328	1338	Right-handed alpha
Helix 100	AL1	D	1347	1354	Right-handed alpha
Helix 101	AL2	D	1362	1372	Right-handed alpha
Helix 102	AL3	E	6	13	Right-handed alpha
Helix 103	AL4	E	17	33	Right-handed alpha
Helix 104	AL5	E	45	57	Right-handed alpha
Helix 105	AL6	E	60	91	Right-handed alpha
Helix 106	AL7	G	18	33	Right-handed alpha
Helix 107	AL8	G	76	86	Right-handed alpha
Helix 108	AL9	G	104	119	Right-handed alpha
Helix 109	AM1	F	4	10	Right-handed alpha
Helix 110	AM2	F	19	39	Right-handed alpha
Helix 111	AM3	F	76	81	Right-handed alpha
Helix 112	AM4	F	82	84	Right-handed 310
Helix 113	AM5	F	106	130	Right-handed alpha
Helix 114	AM6	F	201	212	Right-handed alpha
Helix 115	AM7	F	213	218	Right-handed alpha
Helix 116	AM8	F	246	253	Right-handed alpha
Helix 117	AM9	F	256	266	Right-handed alpha
Helix 118	AN1	F	279	288	Right-handed alpha
Helix 119	AN2	F	313	318	Right-handed alpha
Helix 120	AN3	F	324	331	Right-handed alpha
Helix 121	AN4	F	340	364	Right-handed alpha
Helix 122	AN5	F	366	375	Right-handed alpha
Helix 123	AN6	F	388	393	Right-handed alpha
Helix 124	AN7	F	399	402	Right-handed 310
Helix 125	AN8	F	403	422	Right-handed alpha
Helix 126	AN9	F	423	425	Right-handed 310
Helix 127	AO1	F	442	452	Right-handed alpha
Helix 128	AO2	F	455	462	Right-handed alpha
Helix 129	AO3	F	466	470	Right-handed 310
Helix 130	AO4	F	474	491	Right-handed alpha

There are 46 sheets in PDB entry 7PY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	101	first strand
Strand 2	A	143	147	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	139	140	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	129	131	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	18	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	199	207	anti-parallel
Strand 4	B	180	189	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	53	60	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	104	anti-parallel
Strand 4	C	116	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	285	first strand
Strand 2	C	238	240	anti-parallel
Strand 3	C	227	231	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1210	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1065	1067	anti-parallel
Strand 4	C	1073	1080	anti-parallel
Strand 5	C	816	819	parallel
Strand 6	C	1096	1098	anti-parallel
Strand 7	C	798	804	parallel
Strand 8	C	1225	1234	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	930	935	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	876	877	first strand
Strand 2	C	926	927	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	890	first strand
Strand 2	C	912	915	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	447	448	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	238	243	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	552	parallel
Strand 3	D	568	573	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	556	first strand
Strand 2	D	564	565	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	991	997	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel
Strand 3	D	1002	1003	anti-parallel
Strand 4	D	1018	1019	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1028	first strand
Strand 2	D	1120	1125	anti-parallel
Strand 3	D	1105	1107	anti-parallel
Strand 4	D	1058	1061	anti-parallel
Strand 5	D	1046	1049	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1038	first strand
Strand 2	D	1077	1081	anti-parallel
Strand 3	D	1099	1100	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1190	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	68	73	anti-parallel
Strand 3	G	8	14	anti-parallel
Strand 4	G	89	92	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	49	first strand
Strand 2	F	56	61	anti-parallel
Strand 3	F	94	98	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	179	first strand
Strand 2	F	140	146	anti-parallel
Strand 3	F	149	153	anti-parallel
Strand 4	F	159	162	anti-parallel
Strand 5	F	195	197	parallel
Strand 6	F	183	186	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	222	first strand
Strand 2	F	239	240	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	229	first strand
Strand 2	F	233	236	anti-parallel
Strand 3	F	272	273	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PY5