Analysis of interatomic Contacts of Structural Units in PDB entry:
7PYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PYJ entry

There are 9 chains in PDB entry 7PYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 6LEU 234
B
THR 6GLU 329
C
VAL 2GLU 1342
D
GLU 16ALA 1375
E
ALA 2ARG 91
N
C 9 A 38
R
U 4 G 14
T
T 2 G 31
F
MET 1ALA 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 7PYJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
35 50Right-handed alpha
Helix 2
AA2
A
77 88Right-handed alpha
Helix 3
AA3
A
113 115Right-handed 310
Helix 4
AA4
A
156 161Right-handed 310
Helix 5
AA5
A
212 230Right-handed alpha
Helix 6
AA6
B
34 50Right-handed alpha
Helix 7
AA7
B
77 87Right-handed alpha
Helix 8
AA8
B
111 115Right-handed 310
Helix 9
AA9
B
212 228Right-handed alpha
Helix 10
AB1
B
250 255Right-handed alpha
Helix 11
AB2
B
263 271Right-handed alpha
Helix 12
AB3
B
277 284Right-handed alpha
Helix 13
AB4
B
298 303Right-handed alpha
Helix 14
AB5
B
323 327Right-handed 310
Helix 15
AB6
C
4 10Right-handed alpha
Helix 16
AB7
C
28 40Right-handed alpha
Helix 17
AB8
C
47 57Right-handed alpha
Helix 18
AB9
C
81 89Right-handed alpha
Helix 19
AC1
C
206 213Right-handed alpha
Helix 20
AC2
C
216 223Right-handed alpha
Helix 21
AC3
C
242 247Right-handed alpha
Helix 22
AC4
C
270 280Right-handed alpha
Helix 23
AC5
C
288 293Right-handed alpha
Helix 24
AC6
C
318 329Right-handed alpha
Helix 25
AC7
C
345 354Right-handed alpha
Helix 26
AC8
C
358 371Right-handed alpha
Helix 27
AC9
C
377 390Right-handed alpha
Helix 28
AD1
C
398 409Right-handed alpha
Helix 29
AD2
C
421 437Right-handed alpha
Helix 30
AD3
C
447 449Right-handed 310
Helix 31
AD4
C
455 481Right-handed alpha
Helix 32
AD5
C
488 493Right-handed 310
Helix 33
AD6
C
495 508Right-handed alpha
Helix 34
AD7
C
519 528Right-handed alpha
Helix 35
AD8
C
545 549Right-handed 310
Helix 36
AD9
C
551 555Right-handed 310
Helix 37
AE1
C
607 612Right-handed alpha
Helix 38
AE2
C
648 650Right-handed 310
Helix 39
AE3
C
657 661Right-handed 310
Helix 40
AE4
C
670 674Right-handed 310
Helix 41
AE5
C
675 688Right-handed alpha
Helix 42
AE6
C
704 712Right-handed alpha
Helix 43
AE7
C
820 825Right-handed alpha
Helix 44
AE8
C
898 907Right-handed alpha
Helix 45
AE9
C
942 980Right-handed alpha
Helix 46
AF1
C
986 991Right-handed alpha
Helix 47
AF2
C
993 1000Right-handed alpha
Helix 48
AF3
C
1005 1038Right-handed alpha
Helix 49
AF4
C
1081 1085Right-handed 310
Helix 50
AF5
C
1101 1107Right-handed alpha
Helix 51
AF6
C
1109 1135Right-handed alpha
Helix 52
AF7
C
1137 1151Right-handed alpha
Helix 53
AF8
C
1160 1164Right-handed 310
Helix 54
AF9
C
1166 1176Right-handed alpha
Helix 55
AG1
C
1191 1202Right-handed alpha
Helix 56
AG2
C
1271 1281Right-handed alpha
Helix 57
AG3
C
1283 1293Right-handed alpha
Helix 58
AG4
C
1297 1310Right-handed alpha
Helix 59
AG5
C
1320 1334Right-handed alpha
Helix 60
AG6
D
26 34Right-handed alpha
Helix 61
AG7
D
58 63Right-handed alpha
Helix 62
AG8
D
95 101Right-handed alpha
Helix 63
AG9
D
113 119Right-handed alpha
Helix 64
AH1
D
122 129Right-handed alpha
Helix 65
AH2
D
131 140Right-handed alpha
Helix 66
AH3
D
161 172Right-handed alpha
Helix 67
AH4
D
173 176Right-handed 310
Helix 68
AH5
D
180 190Right-handed alpha
Helix 69
AH6
D
193 207Right-handed alpha
Helix 70
AH7
D
210 231Right-handed alpha
Helix 71
AH8
D
233 238Right-handed 310
Helix 72
AH9
D
256 258Right-handed 310
Helix 73
AI1
D
263 286Right-handed alpha
Helix 74
AI2
D
288 308Right-handed alpha
Helix 75
AI3
D
326 332Right-handed alpha
Helix 76
AI4
D
337 342Right-handed alpha
Helix 77
AI5
D
370 377Right-handed alpha
Helix 78
AI6
D
377 389Right-handed alpha
Helix 79
AI7
D
393 404Right-handed alpha
Helix 80
AI8
D
405 417Right-handed alpha
Helix 81
AI9
D
430 432Right-handed 310
Helix 82
AJ1
D
450 458Right-handed alpha
Helix 83
AJ2
D
473 484Right-handed alpha
Helix 84
AJ3
D
504 513Right-handed alpha
Helix 85
AJ4
D
530 540Right-handed alpha
Helix 86
AJ5
D
574 580Right-handed alpha
Helix 87
AJ6
D
581 583Right-handed 310
Helix 88
AJ7
D
597 612Right-handed alpha
Helix 89
AJ8
D
613 636Right-handed alpha
Helix 90
AJ9
D
640 644Right-handed 310
Helix 91
AK1
D
648 670Right-handed alpha
Helix 92
AK2
D
674 703Right-handed alpha
Helix 93
AK3
D
720 729Right-handed alpha
Helix 94
AK4
D
733 742Right-handed alpha
Helix 95
AK5
D
768 804Right-handed alpha
Helix 96
AK6
D
834 840Right-handed alpha
Helix 97
AK7
D
865 876Right-handed alpha
Helix 98
AK8
D
896 900Right-handed alpha
Helix 99
AK9
D
915 925Right-handed alpha
Helix 100
AL1
D
926 930Right-handed 310
Helix 101
AL2
D
1138 1147Right-handed alpha
Helix 102
AL3
D
1216 1225Right-handed alpha
Helix 103
AL4
D
1225 1244Right-handed alpha
Helix 104
AL5
D
1249 1260Right-handed alpha
Helix 105
AL6
D
1280 1291Right-handed alpha
Helix 106
AL7
D
1308 1315Right-handed alpha
Helix 107
AL8
D
1318 1324Right-handed alpha
Helix 108
AL9
D
1327 1339Right-handed alpha
Helix 109
AM1
D
1347 1354Right-handed alpha
Helix 110
AM2
D
1360 1373Right-handed alpha
Helix 111
AM3
E
6 13Right-handed alpha
Helix 112
AM4
E
15 32Right-handed alpha
Helix 113
AM5
E
45 56Right-handed alpha
Helix 114
AM6
E
60 91Right-handed alpha
Helix 115
AM7
F
3 10Right-handed alpha
Helix 116
AM8
F
19 37Right-handed alpha
Helix 117
AM9
F
70 74Right-handed 310
Helix 118
AN1
F
76 81Right-handed alpha
Helix 119
AN2
F
82 84Right-handed 310
Helix 120
AN3
F
103 132Right-handed alpha
Helix 121
AN4
F
201 213Right-handed alpha
Helix 122
AN5
F
246 253Right-handed alpha
Helix 123
AN6
F
256 267Right-handed alpha
Helix 124
AN7
F
279 288Right-handed alpha
Helix 125
AN8
F
310 319Right-handed alpha
Helix 126
AN9
F
322 333Right-handed alpha
Helix 127
AO1
F
340 363Right-handed alpha
Helix 128
AO2
F
366 377Right-handed alpha
Helix 129
AO3
F
388 395Right-handed 310
Helix 130
AO4
F
401 426Right-handed alpha
Helix 131
AO5
F
431 436Right-handed alpha
Helix 132
AO6
F
441 450Right-handed alpha
Helix 133
AO7
F
455 462Right-handed alpha
Helix 134
AO8
F
463 468Right-handed alpha
Helix 135
AO9
F
475 479Right-handed 310
Helix 136
AP1
F
484 492Right-handed alpha
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There are 53 sheets in PDB entry 7PYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
18 19first strand
Strand 2
A
23 27anti-parallel
Strand 3
A
199 206anti-parallel
Strand 4
A
183 189anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 104first strand
Strand 2
A
140 149anti-parallel
Strand 3
A
53 59anti-parallel
Strand 4
A
171 172anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 91first strand
Strand 2
A
122 123anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 111first strand
Strand 2
A
129 133anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 153first strand
Strand 2
A
175 176anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
16 19first strand
Strand 2
B
23 26anti-parallel
Strand 3
B
200 207anti-parallel
Strand 4
B
180 188anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
52 56first strand
Strand 2
B
140 150anti-parallel
Strand 3
B
98 104anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 109first strand
Strand 2
B
132 133anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
13 14first strand
Strand 2
C
1182 1183parallel
Strand 3
C
700 701parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 75first strand
Strand 2
C
93 105anti-parallel
Strand 3
C
113 128anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
451 454first strand
Strand 2
C
147 151anti-parallel
Strand 3
C
530 531parallel
Strand 4
C
572 573anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 159first strand
Strand 2
C
172 177anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
184 187first strand
Strand 2
C
195 198anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
227 231first strand
Strand 2
C
332 336anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
238 239first strand
Strand 2
C
285 286anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
255 257first strand
Strand 2
C
260 263anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
301 302first strand
Strand 2
C
309 311anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
580 581first strand
Strand 2
C
587 594anti-parallel
Strand 3
C
599 606anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
580 581first strand
Strand 2
C
587 594anti-parallel
Strand 3
C
652 654anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
633 637first strand
Strand 2
C
642 646anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
749 752first strand
Strand 2
C
731 736anti-parallel
Strand 3
C
722 727anti-parallel
Strand 4
C
776 777anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
768 769first strand
Strand 2
C
784 785anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
789 790first strand
Strand 2
C
793 794anti-parallel
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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1209 1210first strand
Strand 2
C
1225 1234anti-parallel
Strand 3
C
1065 1067anti-parallel
Strand 4
C
1073 1080anti-parallel
Strand 5
C
815 819parallel
Strand 6
C
1096 1098anti-parallel
Strand 7
C
798 804parallel
Strand 8
C
1225 1234anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
846 847first strand
Strand 2
C
830 843anti-parallel
Strand 3
C
1046 1058anti-parallel
Strand 4
C
927 935anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
882 884first strand
Strand 2
C
918 919anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
887 888first strand
Strand 2
C
914 915anti-parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1244 1246first strand
Strand 2
D
350 352anti-parallel
Strand 3
D
467 469anti-parallel
Strand 4
D
421 424anti-parallel
Strand 5
D
434 442anti-parallel
Strand 6
D
365 369parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1268 1270first strand
Strand 2
D
345 347anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1335 1341first strand
Strand 2
D
19 24anti-parallel
Strand 3
D
1341 1342anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
84 85first strand
Strand 2
D
90 91anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
104 111first strand
Strand 2
D
239 243anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
144 145first strand
Strand 2
D
159 160anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
253 254first strand
Strand 2
D
260 261anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
355 357first strand
Strand 2
D
447 449parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
526 527first strand
Strand 2
D
547 556parallel
Strand 3
D
564 573anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
705 706first strand
Strand 2
D
715 716anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
809 811first strand
Strand 2
D
894 895parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
820 822first strand
Strand 2
D
880 882anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
842 843first strand
Strand 2
D
863 864anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
957 961first strand
Strand 2
D
981 985anti-parallel
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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
965 967first strand
Strand 2
D
973 975anti-parallel
Strand 3
D
1002 1003anti-parallel
Strand 4
D
1018 1019anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1025 1029first strand
Strand 2
D
1119 1124anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1033 1034first strand
Strand 2
D
1114 1115anti-parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1046 1050first strand
Strand 2
D
1057 1061anti-parallel
Strand 3
D
1106 1107anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1077 1079first strand
Strand 2
D
1098 1100anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1161 1162first strand
Strand 2
D
1203 1204anti-parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1173 1177first strand
Strand 2
D
1186 1190anti-parallel
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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1278 1279first strand
Strand 2
D
1263 1268anti-parallel
Strand 3
D
1301 1304anti-parallel
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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
45 49first strand
Strand 2
F
56 61anti-parallel
Strand 3
F
94 97anti-parallel
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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
137 146first strand
Strand 2
F
149 153anti-parallel
Strand 3
F
159 163anti-parallel
Strand 4
F
192 197parallel
Strand 5
F
178 189anti-parallel
Strand 6
F
137 146anti-parallel
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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
222 229first strand
Strand 2
F
233 239anti-parallel
Strand 3
F
271 274parallel
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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
296 299first strand
Strand 2
F
304 308anti-parallel
Strand 3
F
336 339parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il