Analysis of interatomic Contacts of Structural Units in PDB entry:
7PYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PYV entry

There are 3 chains in PDB entry 7PYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 52	ASP 1050
C	THR 7	GLY 165
B	VAL 50	ASP 1050

There are 88 helices in PDB entry 7PYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	62	Right-handed alpha
Helix 2	AA2	A	70	84	Right-handed alpha
Helix 3	AA3	A	99	104	Right-handed alpha
Helix 4	AA4	A	108	115	Right-handed alpha
Helix 5	AA5	A	117	130	Right-handed alpha
Helix 6	AA6	A	147	154	Right-handed 310
Helix 7	AA7	A	163	177	Right-handed alpha
Helix 8	AA8	A	253	258	Right-handed 310
Helix 9	AA9	A	301	308	Right-handed alpha
Helix 10	AB1	A	320	340	Right-handed alpha
Helix 11	AB2	A	347	365	Right-handed alpha
Helix 12	AB3	A	372	383	Right-handed alpha
Helix 13	AB4	A	387	408	Right-handed alpha
Helix 14	AB5	A	421	426	Right-handed alpha
Helix 15	AB6	A	427	429	Right-handed 310
Helix 16	AB7	A	432	437	Right-handed 310
Helix 17	AB8	A	443	460	Right-handed alpha
Helix 18	AB9	A	469	483	Right-handed alpha
Helix 19	AC1	A	513	517	Right-handed 310
Helix 20	AC2	A	520	533	Right-handed alpha
Helix 21	AC3	A	546	550	Right-handed 310
Helix 22	AC4	A	554	561	Right-handed alpha
Helix 23	AC5	A	570	585	Right-handed alpha
Helix 24	AC6	A	611	615	Right-handed 310
Helix 25	AC7	A	625	630	Right-handed alpha
Helix 26	AC8	A	633	650	Right-handed alpha
Helix 27	AC9	A	650	662	Right-handed alpha
Helix 28	AD1	A	664	672	Right-handed alpha
Helix 29	AD2	A	676	689	Right-handed alpha
Helix 30	AD3	A	695	712	Right-handed alpha
Helix 31	AD4	A	712	722	Right-handed alpha
Helix 32	AD5	A	751	770	Right-handed alpha
Helix 33	AD6	A	776	787	Right-handed alpha
Helix 34	AD7	A	824	833	Right-handed alpha
Helix 35	AD8	A	835	839	Right-handed 310
Helix 36	AD9	A	853	856	Right-handed 310
Helix 37	AE1	A	857	873	Right-handed alpha
Helix 38	AE2	A	879	889	Right-handed alpha
Helix 39	AE3	A	894	915	Right-handed alpha
Helix 40	AE4	A	967	980	Right-handed alpha
Helix 41	AE5	A	1000	1007	Right-handed alpha
Helix 42	AE6	A	1008	1013	Right-handed alpha
Helix 43	AE7	C	29	41	Right-handed alpha
Helix 44	AE8	C	63	67	Right-handed 310
Helix 45	AE9	C	111	124	Right-handed alpha
Helix 46	AF1	C	144	149	Right-handed alpha
Helix 47	AF2	B	54	62	Right-handed alpha
Helix 48	AF3	B	70	84	Right-handed alpha
Helix 49	AF4	B	99	104	Right-handed alpha
Helix 50	AF5	B	108	115	Right-handed alpha
Helix 51	AF6	B	117	130	Right-handed alpha
Helix 52	AF7	B	147	154	Right-handed 310
Helix 53	AF8	B	163	177	Right-handed alpha
Helix 54	AF9	B	253	258	Right-handed 310
Helix 55	AG1	B	301	308	Right-handed alpha
Helix 56	AG2	B	320	340	Right-handed alpha
Helix 57	AG3	B	347	365	Right-handed alpha
Helix 58	AG4	B	372	383	Right-handed alpha
Helix 59	AG5	B	387	408	Right-handed alpha
Helix 60	AG6	B	421	426	Right-handed alpha
Helix 61	AG7	B	427	429	Right-handed 310
Helix 62	AG8	B	432	437	Right-handed 310
Helix 63	AG9	B	443	460	Right-handed alpha
Helix 64	AH1	B	469	483	Right-handed alpha
Helix 65	AH2	B	513	517	Right-handed 310
Helix 66	AH3	B	520	533	Right-handed alpha
Helix 67	AH4	B	546	550	Right-handed 310
Helix 68	AH5	B	554	561	Right-handed alpha
Helix 69	AH6	B	570	585	Right-handed alpha
Helix 70	AH7	B	611	615	Right-handed 310
Helix 71	AH8	B	625	630	Right-handed alpha
Helix 72	AH9	B	633	650	Right-handed alpha
Helix 73	AI1	B	650	662	Right-handed alpha
Helix 74	AI2	B	664	672	Right-handed alpha
Helix 75	AI3	B	676	689	Right-handed alpha
Helix 76	AI4	B	695	712	Right-handed alpha
Helix 77	AI5	B	712	722	Right-handed alpha
Helix 78	AI6	B	751	770	Right-handed alpha
Helix 79	AI7	B	776	787	Right-handed alpha
Helix 80	AI8	B	822	833	Right-handed alpha
Helix 81	AI9	B	835	839	Right-handed 310
Helix 82	AJ1	B	853	856	Right-handed 310
Helix 83	AJ2	B	857	873	Right-handed alpha
Helix 84	AJ3	B	879	889	Right-handed alpha
Helix 85	AJ4	B	894	915	Right-handed alpha
Helix 86	AJ5	B	967	980	Right-handed alpha
Helix 87	AJ6	B	1000	1007	Right-handed alpha
Helix 88	AJ7	B	1008	1013	Right-handed alpha

There are 16 sheets in PDB entry 7PYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	87	91	parallel
Strand 3	A	63	67	parallel
Strand 4	A	156	159	parallel
Strand 5	A	182	189	parallel
Strand 6	A	192	198	anti-parallel
Strand 7	A	416	417	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	295	297	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	262	first strand
Strand 2	A	244	250	anti-parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	270	272	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	493	496	parallel
Strand 3	A	463	466	parallel
Strand 4	A	563	566	parallel
Strand 5	A	588	594	parallel
Strand 6	A	597	603	anti-parallel
Strand 7	A	922	927	anti-parallel
Strand 8	A	932	937	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	728	first strand
Strand 2	A	732	733	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1043	1046	parallel
Strand 3	A	1021	1028	anti-parallel
Strand 4	A	985	987	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1043	1046	parallel
Strand 3	A	1021	1028	anti-parallel
Strand 4	A	1038	1039	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	8	14	anti-parallel
Strand 3	C	73	80	parallel
Strand 4	C	48	52	anti-parallel
Strand 5	C	55	56	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	107	first strand
Strand 2	C	89	95	anti-parallel
Strand 3	C	155	158	parallel
Strand 4	C	132	134	anti-parallel
Strand 5	C	137	138	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	138	first strand
Strand 2	B	87	91	parallel
Strand 3	B	63	67	parallel
Strand 4	B	156	159	parallel
Strand 5	B	182	189	parallel
Strand 6	B	192	198	anti-parallel
Strand 7	B	416	417	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	295	297	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	244	250	anti-parallel
Strand 3	B	285	290	anti-parallel
Strand 4	B	215	221	anti-parallel
Strand 5	B	228	231	anti-parallel
Strand 6	B	270	272	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	541	first strand
Strand 2	B	493	496	parallel
Strand 3	B	463	466	parallel
Strand 4	B	563	566	parallel
Strand 5	B	588	594	parallel
Strand 6	B	597	603	anti-parallel
Strand 7	B	922	927	anti-parallel
Strand 8	B	932	937	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	727	728	first strand
Strand 2	B	732	733	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	985	987	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	958	961	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1021	1028	anti-parallel
Strand 4	B	1038	1039	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PYV