Analysis of interatomic Contacts of Structural Units in PDB entry:
7PZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PZA entry

There are 6 chains in PDB entry 7PZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 232
B
 ARG 6PRO 231
C
 C 1 G 17
D
 G 1 C 14
E
 C 1 A 13
F
 T 6 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7PZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
21 28Right-handed alpha
Helix 3
AA3
A
86 91Right-handed alpha
Helix 4
AA4
A
112 122Right-handed alpha
Helix 5
AA5
A
123 150Right-handed alpha
Helix 6
AA6
A
151 168Right-handed alpha
Helix 7
AA7
A
183 192Right-handed alpha
Helix 8
AA8
A
194 208Right-handed alpha
Helix 9
AA9
A
223 229Right-handed alpha
Helix 10
AB1
B
10 14Right-handed 310
Helix 11
AB2
B
21 29Right-handed alpha
Helix 12
AB3
B
86 91Right-handed alpha
Helix 13
AB4
B
112 122Right-handed alpha
Helix 14
AB5
B
123 150Right-handed alpha
Helix 15
AB6
B
151 168Right-handed alpha
Helix 16
AB7
B
183 192Right-handed alpha
Helix 17
AB8
B
194 208Right-handed alpha
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There are 6 sheets in PDB entry 7PZA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
105 111anti-parallel
Strand 3
A
52 58anti-parallel
Strand 4
A
82 84anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
98 101anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
72 78anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
211 214anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
105 111anti-parallel
Strand 3
B
52 58anti-parallel
Strand 4
B
82 84anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
98 101anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
72 78anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
217 221anti-parallel
Strand 3
B
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il