Analysis of interatomic Contacts of Structural Units in PDB entry:
7PZF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PZF entry

There are 4 chains in PDB entry 7PZF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	PHE 346
B	GLY 0	PHE 346
C	GLY 0	PHE 346
D	GLY 0	ASN 231

There are 39 helices in PDB entry 7PZF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	103	Right-handed alpha
Helix 2	AA2	A	104	106	Right-handed 310
Helix 3	AA3	A	112	116	Right-handed 310
Helix 4	AA4	A	137	142	Right-handed alpha
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	204	208	Right-handed 310
Helix 7	AA7	A	248	250	Right-handed 310
Helix 8	AA8	A	324	331	Right-handed alpha
Helix 9	AA9	B	98	103	Right-handed alpha
Helix 10	AB1	B	104	106	Right-handed 310
Helix 11	AB2	B	112	116	Right-handed 310
Helix 12	AB3	B	170	174	Right-handed 310
Helix 13	AB4	B	248	250	Right-handed 310
Helix 14	AB5	B	324	331	Right-handed alpha
Helix 15	AB6	C	98	103	Right-handed alpha
Helix 16	AB7	C	104	106	Right-handed 310
Helix 17	AB8	C	112	116	Right-handed 310
Helix 18	AB9	C	137	142	Right-handed alpha
Helix 19	AC1	C	170	174	Right-handed 310
Helix 20	AC2	C	248	250	Right-handed 310
Helix 21	AC3	C	324	331	Right-handed alpha
Helix 22	AC4	D	98	103	Right-handed alpha
Helix 23	AC5	D	104	106	Right-handed 310
Helix 24	AC6	D	112	116	Right-handed 310
Helix 25	AC7	D	137	142	Right-handed alpha
Helix 26	AC8	D	170	174	Right-handed 310
Helix 27	AC9	D	324	331	Right-handed alpha
Helix 28	AD1	E	98	103	Right-handed alpha
Helix 29	AD2	E	104	106	Right-handed 310
Helix 30	AD3	E	112	116	Right-handed 310
Helix 31	AD4	E	137	142	Right-handed alpha
Helix 32	AD5	E	170	174	Right-handed 310
Helix 33	AD6	E	248	250	Right-handed 310
Helix 34	AD7	E	324	331	Right-handed alpha
Helix 35	AD8	F	98	103	Right-handed alpha
Helix 36	AD9	F	104	106	Right-handed 310
Helix 37	AE1	F	112	116	Right-handed 310
Helix 38	AE2	F	170	174	Right-handed 310
Helix 39	AE3	F	324	331	Right-handed alpha

There are 6 sheets in PDB entry 7PZF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	6	first strand
Strand 2	A	31	32	first strand
Strand 3	A	35	45	first strand
Strand 4	A	50	61	anti-parallel
Strand 5	A	72	83	anti-parallel
Strand 6	A	88	95	anti-parallel
Strand 7	A	127	136	anti-parallel
Strand 8	A	146	153	anti-parallel
Strand 9	A	178	188	anti-parallel
Strand 10	A	191	201	anti-parallel
Strand 11	A	217	229	anti-parallel
Strand 12	A	232	246	anti-parallel
Strand 13	A	252	265	anti-parallel
Strand 14	A	271	285	anti-parallel
Strand 15	A	290	307	anti-parallel
Strand 16	A	310	319	anti-parallel
Strand 17	A	337	346	anti-parallel
Strand 18	A	9	24	anti-parallel
Strand 19	A	31	32	anti-parallel

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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	6	first strand
Strand 2	B	31	32	first strand
Strand 3	B	35	45	first strand
Strand 4	B	50	61	anti-parallel
Strand 5	B	72	83	anti-parallel
Strand 6	B	87	95	anti-parallel
Strand 7	B	127	136	anti-parallel
Strand 8	B	146	153	anti-parallel
Strand 9	B	178	188	anti-parallel
Strand 10	B	191	201	anti-parallel
Strand 11	B	217	229	anti-parallel
Strand 12	B	232	246	anti-parallel
Strand 13	B	252	265	anti-parallel
Strand 14	B	271	285	anti-parallel
Strand 15	B	290	307	anti-parallel
Strand 16	B	310	319	anti-parallel
Strand 17	B	337	346	anti-parallel
Strand 18	B	9	23	anti-parallel
Strand 19	B	31	32	anti-parallel

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There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	6	first strand
Strand 2	C	31	32	first strand
Strand 3	C	35	45	first strand
Strand 4	C	50	61	anti-parallel
Strand 5	C	72	83	anti-parallel
Strand 6	C	88	95	anti-parallel
Strand 7	C	127	136	anti-parallel
Strand 8	C	147	153	anti-parallel
Strand 9	C	178	188	anti-parallel
Strand 10	C	191	201	anti-parallel
Strand 11	C	217	229	anti-parallel
Strand 12	C	232	246	anti-parallel
Strand 13	C	252	265	anti-parallel
Strand 14	C	271	285	anti-parallel
Strand 15	C	290	307	anti-parallel
Strand 16	C	310	319	anti-parallel
Strand 17	C	337	346	anti-parallel
Strand 18	C	9	24	anti-parallel
Strand 19	C	31	32	anti-parallel

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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	6	first strand
Strand 2	D	31	32	first strand
Strand 3	D	35	45	first strand
Strand 4	D	50	61	anti-parallel
Strand 5	D	72	83	anti-parallel
Strand 6	D	88	95	anti-parallel
Strand 7	D	127	136	anti-parallel
Strand 8	D	146	153	anti-parallel
Strand 9	D	178	188	anti-parallel
Strand 10	D	191	201	anti-parallel
Strand 11	D	217	229	anti-parallel
Strand 12	D	232	246	anti-parallel
Strand 13	D	252	265	anti-parallel
Strand 14	D	271	285	anti-parallel
Strand 15	D	290	307	anti-parallel
Strand 16	D	310	319	anti-parallel
Strand 17	D	337	345	anti-parallel
Strand 18	D	9	24	anti-parallel
Strand 19	D	31	32	anti-parallel

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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1	6	first strand
Strand 2	E	31	32	first strand
Strand 3	E	35	45	first strand
Strand 4	E	50	61	anti-parallel
Strand 5	E	72	83	anti-parallel
Strand 6	E	88	95	anti-parallel
Strand 7	E	127	136	anti-parallel
Strand 8	E	146	153	anti-parallel
Strand 9	E	178	185	anti-parallel
Strand 10	E	192	201	anti-parallel
Strand 11	E	217	229	anti-parallel
Strand 12	E	232	246	anti-parallel
Strand 13	E	252	265	anti-parallel
Strand 14	E	271	285	anti-parallel
Strand 15	E	290	307	anti-parallel
Strand 16	E	310	319	anti-parallel
Strand 17	E	337	346	anti-parallel
Strand 18	E	9	24	anti-parallel
Strand 19	E	31	32	anti-parallel

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There are 19 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1	6	first strand
Strand 2	F	31	32	first strand
Strand 3	F	35	47	first strand
Strand 4	F	50	61	anti-parallel
Strand 5	F	72	83	anti-parallel
Strand 6	F	87	95	anti-parallel
Strand 7	F	127	136	anti-parallel
Strand 8	F	147	153	anti-parallel
Strand 9	F	178	188	anti-parallel
Strand 10	F	191	201	anti-parallel
Strand 11	F	217	229	anti-parallel
Strand 12	F	232	246	anti-parallel
Strand 13	F	252	265	anti-parallel
Strand 14	F	271	285	anti-parallel
Strand 15	F	290	307	anti-parallel
Strand 16	F	310	319	anti-parallel
Strand 17	F	337	346	anti-parallel
Strand 18	F	9	24	anti-parallel
Strand 19	F	31	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PZF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PZF