Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q04 entry

There are 4 chains in PDB entry 7Q04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 154
B	MET 1	LEU 154
C	MET 1	LEU 154
D	SER 4	VAL 186

There are 61 helices in PDB entry 7Q04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	20	Right-handed alpha
Helix 2	AA2	A	22	28	Right-handed 310
Helix 3	AA3	A	41	47	Right-handed alpha
Helix 4	AA4	A	57	71	Right-handed alpha
Helix 5	AA5	B	3	20	Right-handed alpha
Helix 6	AA6	B	22	28	Right-handed 310
Helix 7	AA7	B	41	47	Right-handed alpha
Helix 8	AA8	B	57	71	Right-handed alpha
Helix 9	AA9	C	3	20	Right-handed alpha
Helix 10	AB1	C	22	28	Right-handed 310
Helix 11	AB2	C	41	46	Right-handed alpha
Helix 12	AB3	C	57	71	Right-handed alpha
Helix 13	AB4	D	19	22	Right-handed 310
Helix 14	AB5	D	23	34	Right-handed alpha
Helix 15	AB6	D	47	49	Right-handed 310
Helix 16	AB7	D	135	139	Right-handed 310
Helix 17	AB8	D	163	169	Right-handed alpha
Helix 18	AB9	D	169	180	Right-handed alpha
Helix 19	AC1	D	197	206	Right-handed alpha
Helix 20	AC2	D	207	214	Right-handed alpha
Helix 21	AC3	D	272	276	Right-handed 310
Helix 22	AC4	D	332	343	Right-handed alpha
Helix 23	AC5	D	344	346	Right-handed 310
Helix 24	AC6	D	355	367	Right-handed alpha
Helix 25	AC7	D	393	408	Right-handed alpha
Helix 26	AC8	E	19	22	Right-handed 310
Helix 27	AC9	E	23	34	Right-handed alpha
Helix 28	AD1	E	47	49	Right-handed 310
Helix 29	AD2	E	135	139	Right-handed 310
Helix 30	AD3	E	163	169	Right-handed alpha
Helix 31	AD4	E	169	180	Right-handed alpha
Helix 32	AD5	E	197	206	Right-handed alpha
Helix 33	AD6	E	207	219	Right-handed alpha
Helix 34	AD7	E	272	276	Right-handed 310
Helix 35	AD8	E	332	343	Right-handed alpha
Helix 36	AD9	E	344	346	Right-handed 310
Helix 37	AE1	E	355	367	Right-handed alpha
Helix 38	AE2	E	393	408	Right-handed alpha
Helix 39	AE3	E	412	420	Right-handed alpha
Helix 40	AE4	F	19	22	Right-handed 310
Helix 41	AE5	F	23	34	Right-handed alpha
Helix 42	AE6	F	47	49	Right-handed 310
Helix 43	AE7	F	135	139	Right-handed 310
Helix 44	AE8	F	163	169	Right-handed alpha
Helix 45	AE9	F	169	180	Right-handed alpha
Helix 46	AF1	F	197	206	Right-handed alpha
Helix 47	AF2	F	207	214	Right-handed alpha
Helix 48	AF3	F	272	276	Right-handed 310
Helix 49	AF4	F	332	343	Right-handed alpha
Helix 50	AF5	F	344	346	Right-handed 310
Helix 51	AF6	F	355	367	Right-handed alpha
Helix 52	AF7	F	393	408	Right-handed alpha
Helix 53	AF8	H	4	14	Right-handed alpha
Helix 54	AF9	H	19	23	Right-handed 310
Helix 55	AG1	H	24	37	Right-handed alpha
Helix 56	AG2	H	55	57	Right-handed 310
Helix 57	AG3	H	79	85	Right-handed 310
Helix 58	AG4	H	88	101	Right-handed alpha
Helix 59	AG5	H	102	107	Right-handed 310
Helix 60	AG6	H	108	115	Right-handed alpha
Helix 61	AG7	H	119	125	Right-handed 310

There are 19 sheets in PDB entry 7Q04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	A	131	141	parallel
Strand 4	A	113	128	anti-parallel
Strand 5	A	96	108	anti-parallel
Strand 6	A	77	83	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	A	131	141	parallel
Strand 4	A	113	128	anti-parallel
Strand 5	A	96	108	anti-parallel
Strand 6	A	87	91	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	D	184	194	parallel
Strand 3	D	318	328	anti-parallel
Strand 4	D	305	315	anti-parallel
Strand 5	D	297	302	anti-parallel
Strand 6	D	286	293	anti-parallel
Strand 7	D	241	246	anti-parallel
Strand 8	D	229	234	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	131	141	parallel
Strand 4	B	113	128	anti-parallel
Strand 5	B	96	108	anti-parallel
Strand 6	B	77	83	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	131	141	parallel
Strand 4	B	113	128	anti-parallel
Strand 5	B	96	108	anti-parallel
Strand 6	B	87	91	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	E	184	194	parallel
Strand 3	E	318	328	anti-parallel
Strand 4	E	305	315	anti-parallel
Strand 5	E	297	302	anti-parallel
Strand 6	E	286	293	anti-parallel
Strand 7	E	241	246	anti-parallel
Strand 8	E	229	234	anti-parallel
Strand 9	E	387	388	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	C	131	141	parallel
Strand 4	C	113	128	anti-parallel
Strand 5	C	96	108	anti-parallel
Strand 6	C	77	83	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	C	131	141	parallel
Strand 4	C	113	128	anti-parallel
Strand 5	C	96	108	anti-parallel
Strand 6	C	87	91	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	F	184	194	parallel
Strand 3	F	318	328	anti-parallel
Strand 4	F	305	315	anti-parallel
Strand 5	F	297	302	anti-parallel
Strand 6	F	286	293	anti-parallel
Strand 7	F	241	246	anti-parallel
Strand 8	F	229	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	374	376	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	152	156	anti-parallel
Strand 3	D	143	149	anti-parallel
Strand 4	D	75	79	anti-parallel
Strand 5	D	63	69	anti-parallel
Strand 6	D	54	60	anti-parallel
Strand 7	D	94	96	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	101	first strand
Strand 2	D	108	109	anti-parallel
Strand 3	D	115	117	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	374	376	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	45	first strand
Strand 2	E	152	156	anti-parallel
Strand 3	E	143	149	anti-parallel
Strand 4	E	75	79	anti-parallel
Strand 5	E	63	69	anti-parallel
Strand 6	E	54	60	anti-parallel
Strand 7	E	94	96	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	108	109	anti-parallel
Strand 3	E	115	117	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	374	376	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	45	first strand
Strand 2	F	152	156	anti-parallel
Strand 3	F	143	149	anti-parallel
Strand 4	F	75	79	anti-parallel
Strand 5	F	63	69	anti-parallel
Strand 6	F	54	60	anti-parallel
Strand 7	F	94	96	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	101	first strand
Strand 2	F	108	109	anti-parallel
Strand 3	F	115	117	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	45	first strand
Strand 2	H	51	53	anti-parallel
Strand 3	H	58	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q04

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q04