Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q0J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q0J entry

There are 8 chains in PDB entry 7Q0J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	LEU 234
B	SER 4	VAL 232
C	VAL 2	GLU 1342
D	GLU 16	ARG 1373
E	ALA 2	GLU 74
N	C 24	G 39
R	U 4	G 14
T	C 1	G 26

There are109 helices in PDB entry 7Q0J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	212	230	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	78	87	Right-handed alpha
Helix 7	AA7	B	113	115	Right-handed 310
Helix 8	AA8	B	154	158	Right-handed 310
Helix 9	AA9	B	212	228	Right-handed alpha
Helix 10	AB1	C	6	10	Right-handed 310
Helix 11	AB2	C	28	39	Right-handed alpha
Helix 12	AB3	C	48	57	Right-handed alpha
Helix 13	AB4	C	82	89	Right-handed alpha
Helix 14	AB5	C	206	213	Right-handed alpha
Helix 15	AB6	C	216	225	Right-handed alpha
Helix 16	AB7	C	242	247	Right-handed 310
Helix 17	AB8	C	270	279	Right-handed alpha
Helix 18	AB9	C	289	294	Right-handed 310
Helix 19	AC1	C	318	327	Right-handed alpha
Helix 20	AC2	C	345	353	Right-handed alpha
Helix 21	AC3	C	358	371	Right-handed alpha
Helix 22	AC4	C	377	390	Right-handed alpha
Helix 23	AC5	C	398	409	Right-handed alpha
Helix 24	AC6	C	422	438	Right-handed alpha
Helix 25	AC7	C	447	449	Right-handed 310
Helix 26	AC8	C	455	480	Right-handed alpha
Helix 27	AC9	C	495	508	Right-handed alpha
Helix 28	AD1	C	519	526	Right-handed alpha
Helix 29	AD2	C	551	555	Right-handed 310
Helix 30	AD3	C	609	614	Right-handed 310
Helix 31	AD4	C	656	661	Right-handed 310
Helix 32	AD5	C	664	668	Right-handed 310
Helix 33	AD6	C	670	674	Right-handed 310
Helix 34	AD7	C	675	687	Right-handed alpha
Helix 35	AD8	C	704	712	Right-handed alpha
Helix 36	AD9	C	820	826	Right-handed alpha
Helix 37	AE1	C	858	864	Right-handed alpha
Helix 38	AE2	C	902	907	Right-handed alpha
Helix 39	AE3	C	942	979	Right-handed alpha
Helix 40	AE4	C	987	992	Right-handed alpha
Helix 41	AE5	C	1006	1038	Right-handed alpha
Helix 42	AE6	C	1081	1085	Right-handed 310
Helix 43	AE7	C	1101	1106	Right-handed alpha
Helix 44	AE8	C	1109	1133	Right-handed alpha
Helix 45	AE9	C	1137	1150	Right-handed alpha
Helix 46	AF1	C	1165	1175	Right-handed alpha
Helix 47	AF2	C	1191	1202	Right-handed alpha
Helix 48	AF3	C	1272	1281	Right-handed alpha
Helix 49	AF4	C	1284	1293	Right-handed alpha
Helix 50	AF5	C	1297	1309	Right-handed alpha
Helix 51	AF6	C	1320	1333	Right-handed alpha
Helix 52	AF7	D	26	34	Right-handed alpha
Helix 53	AF8	D	58	63	Right-handed alpha
Helix 54	AF9	D	77	81	Right-handed 310
Helix 55	AG1	D	94	100	Right-handed 310
Helix 56	AG2	D	122	129	Right-handed alpha
Helix 57	AG3	D	131	139	Right-handed alpha
Helix 58	AG4	D	161	171	Right-handed alpha
Helix 59	AG5	D	180	191	Right-handed alpha
Helix 60	AG6	D	195	208	Right-handed alpha
Helix 61	AG7	D	210	230	Right-handed alpha
Helix 62	AG8	D	233	236	Right-handed 310
Helix 63	AG9	D	246	250	Right-handed 310
Helix 64	AH1	D	263	283	Right-handed alpha
Helix 65	AH2	D	284	286	Right-handed 310
Helix 66	AH3	D	288	308	Right-handed alpha
Helix 67	AH4	D	326	332	Right-handed alpha
Helix 68	AH5	D	337	342	Right-handed alpha
Helix 69	AH6	D	370	377	Right-handed alpha
Helix 70	AH7	D	377	389	Right-handed alpha
Helix 71	AH8	D	393	404	Right-handed alpha
Helix 72	AH9	D	405	407	Right-handed 310
Helix 73	AI1	D	408	415	Right-handed alpha
Helix 74	AI2	D	430	434	Right-handed 310
Helix 75	AI3	D	450	458	Right-handed alpha
Helix 76	AI4	D	473	484	Right-handed alpha
Helix 77	AI5	D	504	514	Right-handed alpha
Helix 78	AI6	D	529	540	Right-handed alpha
Helix 79	AI7	D	574	581	Right-handed alpha
Helix 80	AI8	D	588	593	Right-handed 310
Helix 81	AI9	D	597	612	Right-handed alpha
Helix 82	AJ1	D	614	636	Right-handed alpha
Helix 83	AJ2	D	640	644	Right-handed 310
Helix 84	AJ3	D	649	669	Right-handed alpha
Helix 85	AJ4	D	674	703	Right-handed alpha
Helix 86	AJ5	D	720	728	Right-handed alpha
Helix 87	AJ6	D	733	741	Right-handed alpha
Helix 88	AJ7	D	768	804	Right-handed alpha
Helix 89	AJ8	D	834	840	Right-handed alpha
Helix 90	AJ9	D	865	874	Right-handed alpha
Helix 91	AK1	D	885	888	Right-handed 310
Helix 92	AK2	D	896	900	Right-handed alpha
Helix 93	AK3	D	914	925	Right-handed alpha
Helix 94	AK4	D	926	928	Right-handed 310
Helix 95	AK5	D	1068	1073	Right-handed alpha
Helix 96	AK6	D	1137	1147	Right-handed alpha
Helix 97	AK7	D	1216	1224	Right-handed alpha
Helix 98	AK8	D	1225	1244	Right-handed alpha
Helix 99	AK9	D	1250	1261	Right-handed alpha
Helix 100	AL1	D	1282	1293	Right-handed alpha
Helix 101	AL2	D	1308	1313	Right-handed alpha
Helix 102	AL3	D	1319	1324	Right-handed alpha
Helix 103	AL4	D	1328	1339	Right-handed alpha
Helix 104	AL5	D	1347	1354	Right-handed alpha
Helix 105	AL6	D	1361	1373	Right-handed alpha
Helix 106	AL7	E	6	13	Right-handed alpha
Helix 107	AL8	E	17	30	Right-handed alpha
Helix 108	AL9	E	45	56	Right-handed alpha
Helix 109	AM1	E	60	72	Right-handed alpha

There are 43 sheets in PDB entry 7Q0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	24	28	anti-parallel
Strand 3	A	199	204	anti-parallel
Strand 4	A	184	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	101	first strand
Strand 2	A	142	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	139	140	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	24	27	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	114	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	158	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	231	first strand
Strand 2	C	332	336	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	633	637	anti-parallel
Strand 3	C	642	646	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1226	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	838	first strand
Strand 2	C	1048	1058	anti-parallel
Strand 3	C	927	935	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	889	first strand
Strand 2	C	913	915	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1245	first strand
Strand 2	D	351	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	435	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1245	first strand
Strand 2	D	351	356	anti-parallel
Strand 3	D	447	448	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1269	first strand
Strand 2	D	346	347	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1338	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	238	244	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	559	parallel
Strand 3	D	562	573	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	819	822	first strand
Strand 2	D	880	883	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	996	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1028	first strand
Strand 2	D	1120	1125	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1035	first strand
Strand 2	D	1113	1114	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1172	1178	anti-parallel
Strand 3	D	1188	1191	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q0J

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q0J