Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q0Q entry

There are 2 chains in PDB entry 7Q0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21ASP 286
B
 ILE 26ASP 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7Q0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 41Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 109Right-handed alpha
Helix 6
AA6
A
124 131Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
170 178Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
193 202Right-handed alpha
Helix 11
AB2
A
240 251Right-handed alpha
Helix 12
AB3
A
269 285Right-handed alpha
Helix 13
AB4
B
29 41Right-handed alpha
Helix 14
AB5
B
53 58Right-handed alpha
Helix 15
AB6
B
63 76Right-handed alpha
Helix 16
AB7
B
93 97Right-handed 310
Helix 17
AB8
B
98 109Right-handed alpha
Helix 18
AB9
B
124 131Right-handed alpha
Helix 19
AC1
B
152 158Right-handed alpha
Helix 20
AC2
B
170 178Right-handed alpha
Helix 21
AC3
B
188 192Right-handed 310
Helix 22
AC4
B
193 202Right-handed alpha
Helix 23
AC5
B
240 251Right-handed alpha
Helix 24
AC6
B
269 285Right-handed alpha
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There are 4 sheets in PDB entry 7Q0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
47 52parallel
Strand 5
A
181 185parallel
Strand 6
A
262 268anti-parallel
Strand 7
A
255 259anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 218first strand
Strand 2
A
221 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
47 52parallel
Strand 5
B
181 185parallel
Strand 6
B
262 268anti-parallel
Strand 7
B
255 259anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 218first strand
Strand 2
B
221 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il