Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q1D entry

There are 4 chains in PDB entry 7Q1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 26ALA 288
B
 ILE 26ASP 286
C
 ILE 26ASP 286
D
 SER 19TYR 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 7Q1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 41Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 109Right-handed alpha
Helix 6
AA6
A
120 123Right-handed 310
Helix 7
AA7
A
124 132Right-handed alpha
Helix 8
AA8
A
152 158Right-handed alpha
Helix 9
AA9
A
170 178Right-handed alpha
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
193 202Right-handed alpha
Helix 12
AB3
A
240 251Right-handed alpha
Helix 13
AB4
A
269 285Right-handed alpha
Helix 14
AB5
B
29 41Right-handed alpha
Helix 15
AB6
B
53 58Right-handed alpha
Helix 16
AB7
B
63 76Right-handed alpha
Helix 17
AB8
B
93 97Right-handed 310
Helix 18
AB9
B
98 109Right-handed alpha
Helix 19
AC1
B
120 123Right-handed 310
Helix 20
AC2
B
124 132Right-handed alpha
Helix 21
AC3
B
152 158Right-handed alpha
Helix 22
AC4
B
170 178Right-handed alpha
Helix 23
AC5
B
188 192Right-handed 310
Helix 24
AC6
B
193 202Right-handed alpha
Helix 25
AC7
B
240 251Right-handed alpha
Helix 26
AC8
B
269 285Right-handed alpha
Helix 27
AC9
C
29 41Right-handed alpha
Helix 28
AD1
C
53 58Right-handed alpha
Helix 29
AD2
C
63 76Right-handed alpha
Helix 30
AD3
C
93 97Right-handed 310
Helix 31
AD4
C
98 109Right-handed alpha
Helix 32
AD5
C
120 123Right-handed 310
Helix 33
AD6
C
124 132Right-handed alpha
Helix 34
AD7
C
152 158Right-handed alpha
Helix 35
AD8
C
170 178Right-handed alpha
Helix 36
AD9
C
188 192Right-handed 310
Helix 37
AE1
C
193 202Right-handed alpha
Helix 38
AE2
C
240 251Right-handed alpha
Helix 39
AE3
C
269 285Right-handed alpha
Helix 40
AE4
D
29 41Right-handed alpha
Helix 41
AE5
D
53 58Right-handed alpha
Helix 42
AE6
D
63 76Right-handed alpha
Helix 43
AE7
D
93 97Right-handed 310
Helix 44
AE8
D
98 109Right-handed alpha
Helix 45
AE9
D
120 123Right-handed 310
Helix 46
AF1
D
124 132Right-handed alpha
Helix 47
AF2
D
152 158Right-handed alpha
Helix 48
AF3
D
170 178Right-handed alpha
Helix 49
AF4
D
188 192Right-handed 310
Helix 50
AF5
D
193 202Right-handed alpha
Helix 51
AF6
D
240 251Right-handed alpha
Helix 52
AF7
D
269 285Right-handed alpha
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There are 7 sheets in PDB entry 7Q1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
146 150anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
47 52parallel
Strand 5
A
181 185parallel
Strand 6
A
262 268anti-parallel
Strand 7
A
255 259anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 230first strand
Strand 2
A
206 218anti-parallel
Strand 3
B
206 218anti-parallel
Strand 4
B
221 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
146 150anti-parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
47 52parallel
Strand 5
B
181 185parallel
Strand 6
B
262 268anti-parallel
Strand 7
B
255 259anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
146 150anti-parallel
Strand 3
C
80 84anti-parallel
Strand 4
C
47 52parallel
Strand 5
C
181 185parallel
Strand 6
C
262 268anti-parallel
Strand 7
C
255 259anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 218first strand
Strand 2
C
221 230anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 138first strand
Strand 2
D
146 150anti-parallel
Strand 3
D
80 84anti-parallel
Strand 4
D
47 52parallel
Strand 5
D
181 185parallel
Strand 6
D
262 268anti-parallel
Strand 7
D
255 259anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 218first strand
Strand 2
D
221 230anti-parallel
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