Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q1F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q1F entry

There are 6 chains in PDB entry 7Q1F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 438
B	MET 1	ASP 441
C	ASP 12	LYS 228
D	PRO 13	LYS 195
P	MET 319	THR 386
R	MET 1	GLN 31

There are153 helices in PDB entry 7Q1F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	72	81	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	110	113	Right-handed 310
Helix 7	AA7	A	114	127	Right-handed alpha
Helix 8	AA8	A	143	161	Right-handed alpha
Helix 9	AA9	A	182	195	Right-handed alpha
Helix 10	AB1	A	206	217	Right-handed alpha
Helix 11	AB2	A	223	244	Right-handed alpha
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	287	296	Right-handed alpha
Helix 14	AB5	A	297	301	Right-handed 310
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	324	336	Right-handed alpha
Helix 17	AB8	A	384	400	Right-handed alpha
Helix 18	AB9	A	404	410	Right-handed alpha
Helix 19	AC1	A	414	436	Right-handed alpha
Helix 20	AC2	B	10	29	Right-handed alpha
Helix 21	AC3	B	41	46	Right-handed alpha
Helix 22	AC4	B	47	49	Right-handed 310
Helix 23	AC5	B	71	81	Right-handed alpha
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	102	108	Right-handed alpha
Helix 26	AC8	B	109	128	Right-handed alpha
Helix 27	AC9	B	144	161	Right-handed alpha
Helix 28	AD1	B	182	198	Right-handed alpha
Helix 29	AD2	B	206	216	Right-handed alpha
Helix 30	AD3	B	223	244	Right-handed alpha
Helix 31	AD4	B	251	260	Right-handed alpha
Helix 32	AD5	B	287	296	Right-handed alpha
Helix 33	AD6	B	297	301	Right-handed 310
Helix 34	AD7	B	306	310	Right-handed 310
Helix 35	AD8	B	324	339	Right-handed alpha
Helix 36	AD9	B	340	343	Right-handed 310
Helix 37	AE1	B	384	400	Right-handed alpha
Helix 38	AE2	B	405	410	Right-handed alpha
Helix 39	AE3	B	415	438	Right-handed alpha
Helix 40	AE4	C	13	22	Right-handed alpha
Helix 41	AE5	C	23	25	Right-handed 310
Helix 42	AE6	C	27	42	Right-handed alpha
Helix 43	AE7	C	43	45	Right-handed 310
Helix 44	AE8	C	46	54	Right-handed alpha
Helix 45	AE9	C	58	73	Right-handed alpha
Helix 46	AF1	C	74	76	Right-handed 310
Helix 47	AF2	C	77	85	Right-handed alpha
Helix 48	AF3	C	89	104	Right-handed alpha
Helix 49	AF4	C	105	107	Right-handed 310
Helix 50	AF5	C	108	116	Right-handed alpha
Helix 51	AF6	C	120	135	Right-handed alpha
Helix 52	AF7	C	136	138	Right-handed 310
Helix 53	AF8	C	139	147	Right-handed alpha
Helix 54	AF9	C	151	166	Right-handed alpha
Helix 55	AG1	C	167	169	Right-handed 310
Helix 56	AG2	C	170	178	Right-handed alpha
Helix 57	AG3	C	182	197	Right-handed alpha
Helix 58	AG4	C	197	212	Right-handed alpha
Helix 59	AG5	C	214	227	Right-handed alpha
Helix 60	AG6	D	14	22	Right-handed alpha
Helix 61	AG7	D	23	25	Right-handed 310
Helix 62	AG8	D	27	42	Right-handed alpha
Helix 63	AG9	D	43	45	Right-handed 310
Helix 64	AH1	D	46	54	Right-handed alpha
Helix 65	AH2	D	58	73	Right-handed alpha
Helix 66	AH3	D	74	76	Right-handed 310
Helix 67	AH4	D	77	85	Right-handed alpha
Helix 68	AH5	D	89	104	Right-handed alpha
Helix 69	AH6	D	105	107	Right-handed 310
Helix 70	AH7	D	108	116	Right-handed alpha
Helix 71	AH8	D	120	134	Right-handed alpha
Helix 72	AH9	D	139	145	Right-handed alpha
Helix 73	AI1	D	154	165	Right-handed alpha
Helix 74	AI2	D	171	175	Right-handed 310
Helix 75	AI3	P	321	325	Right-handed 310
Helix 76	AI4	P	338	351	Right-handed alpha
Helix 77	AI5	P	381	386	Right-handed 310
Helix 78	AI6	R	10	29	Right-handed alpha
Helix 79	AI7	R	47	51	Right-handed 310
Helix 80	AI8	R	72	81	Right-handed alpha
Helix 81	AI9	R	88	90	Right-handed 310
Helix 82	AJ1	R	102	108	Right-handed alpha
Helix 83	AJ2	R	110	113	Right-handed 310
Helix 84	AJ3	R	114	128	Right-handed alpha
Helix 85	AJ4	R	143	161	Right-handed alpha
Helix 86	AJ5	R	182	195	Right-handed alpha
Helix 87	AJ6	R	206	217	Right-handed alpha
Helix 88	AJ7	R	223	244	Right-handed alpha
Helix 89	AJ8	R	251	260	Right-handed alpha
Helix 90	AJ9	R	287	295	Right-handed alpha
Helix 91	AK1	R	296	301	Right-handed 310
Helix 92	AK2	R	306	310	Right-handed 310
Helix 93	AK3	R	324	336	Right-handed alpha
Helix 94	AK4	R	384	400	Right-handed alpha
Helix 95	AK5	R	404	410	Right-handed alpha
Helix 96	AK6	R	414	436	Right-handed alpha
Helix 97	AK7	S	10	29	Right-handed alpha
Helix 98	AK8	S	41	46	Right-handed alpha
Helix 99	AK9	S	47	49	Right-handed 310
Helix 100	AL1	S	71	81	Right-handed alpha
Helix 101	AL2	S	88	90	Right-handed 310
Helix 102	AL3	S	102	108	Right-handed alpha
Helix 103	AL4	S	109	128	Right-handed alpha
Helix 104	AL5	S	144	161	Right-handed alpha
Helix 105	AL6	S	182	198	Right-handed alpha
Helix 106	AL7	S	206	216	Right-handed alpha
Helix 107	AL8	S	223	244	Right-handed alpha
Helix 108	AL9	S	251	260	Right-handed alpha
Helix 109	AM1	S	287	296	Right-handed alpha
Helix 110	AM2	S	297	301	Right-handed 310
Helix 111	AM3	S	306	310	Right-handed 310
Helix 112	AM4	S	324	339	Right-handed alpha
Helix 113	AM5	S	340	343	Right-handed 310
Helix 114	AM6	S	384	400	Right-handed alpha
Helix 115	AM7	S	405	410	Right-handed alpha
Helix 116	AM8	S	415	438	Right-handed alpha
Helix 117	AM9	T	13	22	Right-handed alpha
Helix 118	AN1	T	23	25	Right-handed 310
Helix 119	AN2	T	27	42	Right-handed alpha
Helix 120	AN3	T	43	45	Right-handed 310
Helix 121	AN4	T	46	54	Right-handed alpha
Helix 122	AN5	T	58	73	Right-handed alpha
Helix 123	AN6	T	74	76	Right-handed 310
Helix 124	AN7	T	77	85	Right-handed alpha
Helix 125	AN8	T	89	104	Right-handed alpha
Helix 126	AN9	T	105	107	Right-handed 310
Helix 127	AO1	T	108	116	Right-handed alpha
Helix 128	AO2	T	120	135	Right-handed alpha
Helix 129	AO3	T	136	138	Right-handed 310
Helix 130	AO4	T	139	147	Right-handed alpha
Helix 131	AO5	T	151	166	Right-handed alpha
Helix 132	AO6	T	167	169	Right-handed 310
Helix 133	AO7	T	170	178	Right-handed alpha
Helix 134	AO8	T	182	197	Right-handed alpha
Helix 135	AO9	T	197	212	Right-handed alpha
Helix 136	AP1	T	214	227	Right-handed alpha
Helix 137	AP2	U	16	22	Right-handed alpha
Helix 138	AP3	U	23	25	Right-handed 310
Helix 139	AP4	U	27	42	Right-handed alpha
Helix 140	AP5	U	43	45	Right-handed 310
Helix 141	AP6	U	46	54	Right-handed alpha
Helix 142	AP7	U	58	73	Right-handed alpha
Helix 143	AP8	U	74	76	Right-handed 310
Helix 144	AP9	U	77	85	Right-handed alpha
Helix 145	AQ1	U	89	103	Right-handed alpha
Helix 146	AQ2	U	108	116	Right-handed alpha
Helix 147	AQ3	U	120	133	Right-handed alpha
Helix 148	AQ4	U	136	138	Right-handed 310
Helix 149	AQ5	U	139	146	Right-handed alpha
Helix 150	AQ6	U	155	163	Right-handed alpha
Helix 151	AQ7	U	170	175	Right-handed alpha
Helix 152	AQ8	V	338	351	Right-handed alpha
Helix 153	AQ9	V	381	385	Right-handed 310

There are 10 sheets in PDB entry 7Q1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel
Strand 7	B	267	273	parallel
Strand 8	B	373	381	anti-parallel
Strand 9	B	312	321	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	60	63	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	92	94	first strand
Strand 2	R	65	69	parallel
Strand 3	R	4	9	parallel
Strand 4	R	134	140	parallel
Strand 5	R	165	172	parallel
Strand 6	R	200	205	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	53	55	first strand
Strand 2	R	61	63	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	269	273	first strand
Strand 2	R	373	381	anti-parallel
Strand 3	R	312	321	anti-parallel
Strand 4	R	351	356	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	92	94	first strand
Strand 2	S	65	69	parallel
Strand 3	S	3	9	parallel
Strand 4	S	132	140	parallel
Strand 5	S	165	172	parallel
Strand 6	S	200	205	parallel
Strand 7	S	267	273	parallel
Strand 8	S	373	381	anti-parallel
Strand 9	S	312	321	anti-parallel
Strand 10	S	351	356	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	51	56	first strand
Strand 2	S	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q1F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q1F