Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q1Y entry

There is 1 chain in PDB entry 7Q1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 20	ASN 1363

There are 44 helices in PDB entry 7Q1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	404	409	Right-handed 310
Helix 2	AA2	A	596	602	Right-handed alpha
Helix 3	AA3	A	608	614	Right-handed alpha
Helix 4	AA4	A	670	677	Right-handed alpha
Helix 5	AA5	A	836	841	Right-handed 310
Helix 6	AA6	A	953	959	Right-handed alpha
Helix 7	AA7	A	960	963	Right-handed 310
Helix 8	AA8	A	972	977	Right-handed 310
Helix 9	AA9	A	978	991	Right-handed alpha
Helix 10	AB1	A	995	1014	Right-handed alpha
Helix 11	AB2	A	1015	1017	Right-handed 310
Helix 12	AB3	A	1026	1030	Right-handed 310
Helix 13	AB4	A	1034	1049	Right-handed alpha
Helix 14	AB5	A	1055	1069	Right-handed alpha
Helix 15	AB6	A	1094	1108	Right-handed alpha
Helix 16	AB7	A	1114	1127	Right-handed alpha
Helix 17	AB8	A	1133	1148	Right-handed alpha
Helix 18	AB9	A	1149	1162	Right-handed alpha
Helix 19	AC1	A	1190	1205	Right-handed alpha
Helix 20	AC2	A	1211	1226	Right-handed alpha
Helix 21	AC3	A	1238	1255	Right-handed alpha
Helix 22	AC4	A	1380	1388	Right-handed alpha
Helix 23	AC5	B	404	408	Right-handed 310
Helix 24	AC6	B	596	602	Right-handed alpha
Helix 25	AC7	B	608	615	Right-handed alpha
Helix 26	AC8	B	670	677	Right-handed alpha
Helix 27	AC9	B	836	840	Right-handed 310
Helix 28	AD1	B	953	959	Right-handed alpha
Helix 29	AD2	B	972	977	Right-handed 310
Helix 30	AD3	B	978	991	Right-handed alpha
Helix 31	AD4	B	995	1014	Right-handed alpha
Helix 32	AD5	B	1015	1017	Right-handed 310
Helix 33	AD6	B	1026	1030	Right-handed 310
Helix 34	AD7	B	1034	1049	Right-handed alpha
Helix 35	AD8	B	1055	1069	Right-handed alpha
Helix 36	AD9	B	1094	1108	Right-handed alpha
Helix 37	AE1	B	1114	1124	Right-handed alpha
Helix 38	AE2	B	1133	1148	Right-handed alpha
Helix 39	AE3	B	1149	1162	Right-handed alpha
Helix 40	AE4	B	1190	1205	Right-handed alpha
Helix 41	AE5	B	1211	1226	Right-handed alpha
Helix 42	AE6	B	1227	1229	Right-handed 310
Helix 43	AE7	B	1238	1255	Right-handed alpha
Helix 44	AE8	B	1380	1387	Right-handed alpha

There are 44 sheets in PDB entry 7Q1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	79	82	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	680	684	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	106	116	parallel
Strand 3	A	91	101	anti-parallel
Strand 4	A	51	57	anti-parallel
Strand 5	A	62	69	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	126	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	150	151	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	126	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	180	186	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	205	211	parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	155	161	anti-parallel
Strand 5	A	167	174	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	235	244	anti-parallel
Strand 3	A	291	297	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	285	first strand
Strand 2	A	252	260	anti-parallel
Strand 3	A	311	320	anti-parallel
Strand 4	A	326	334	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	345	first strand
Strand 2	A	357	365	anti-parallel
Strand 3	A	398	403	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	438	444	parallel
Strand 3	A	413	418	anti-parallel
Strand 4	A	375	381	anti-parallel
Strand 5	A	387	392	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	455	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	515	523	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	508	first strand
Strand 2	A	486	495	anti-parallel
Strand 3	A	533	539	anti-parallel
Strand 4	A	545	551	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	777	778	parallel
Strand 3	A	762	770	anti-parallel
Strand 4	A	782	786	anti-parallel
Strand 5	A	570	571	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	561	first strand
Strand 2	A	777	778	parallel
Strand 3	A	762	770	anti-parallel
Strand 4	A	588	595	anti-parallel
Strand 5	A	741	743	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	567	first strand
Strand 2	A	576	582	anti-parallel
Strand 3	A	749	755	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	795	first strand
Strand 2	A	805	814	anti-parallel
Strand 3	A	851	860	anti-parallel
Strand 4	A	832	834	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	795	first strand
Strand 2	A	805	814	anti-parallel
Strand 3	A	1425	1426	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	801	first strand
Strand 2	A	894	904	parallel
Strand 3	A	864	874	anti-parallel
Strand 4	A	820	826	anti-parallel
Strand 5	A	845	846	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	918	first strand
Strand 2	A	1308	1318	anti-parallel
Strand 3	A	943	949	anti-parallel
Strand 4	A	1287	1290	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	925	930	first strand
Strand 2	A	1297	1305	anti-parallel
Strand 3	A	1261	1268	anti-parallel
Strand 4	A	1272	1278	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1165	1167	first strand
Strand 2	A	1170	1172	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1327	1334	first strand
Strand 2	A	1346	1355	anti-parallel
Strand 3	A	1413	1421	anti-parallel
Strand 4	A	1375	1377	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1391	1396	first strand
Strand 2	A	1400	1405	anti-parallel
Strand 3	A	1365	1370	anti-parallel
Strand 4	A	1431	1437	anti-parallel
Strand 5	A	1440	1449	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	82	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	23	28	anti-parallel
Strand 4	B	680	684	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	106	116	parallel
Strand 3	B	91	101	anti-parallel
Strand 4	B	51	57	anti-parallel
Strand 5	B	62	69	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	136	144	anti-parallel
Strand 3	B	180	186	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	205	211	parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	155	161	anti-parallel
Strand 5	B	167	174	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	223	first strand
Strand 2	B	235	244	anti-parallel
Strand 3	B	291	297	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	285	first strand
Strand 2	B	252	260	anti-parallel
Strand 3	B	311	320	anti-parallel
Strand 4	B	326	334	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	403	first strand
Strand 2	B	357	365	anti-parallel
Strand 3	B	340	345	anti-parallel
Strand 4	B	435	436	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	438	444	parallel
Strand 3	B	413	418	anti-parallel
Strand 4	B	375	381	anti-parallel
Strand 5	B	387	392	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	455	first strand
Strand 2	B	467	475	anti-parallel
Strand 3	B	515	523	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	508	first strand
Strand 2	B	486	495	anti-parallel
Strand 3	B	533	539	anti-parallel
Strand 4	B	545	551	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	775	778	parallel
Strand 3	B	762	771	anti-parallel
Strand 4	B	782	786	anti-parallel
Strand 5	B	570	571	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	561	first strand
Strand 2	B	775	778	parallel
Strand 3	B	762	771	anti-parallel
Strand 4	B	588	595	anti-parallel
Strand 5	B	741	743	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	567	first strand
Strand 2	B	576	582	anti-parallel
Strand 3	B	749	755	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	795	first strand
Strand 2	B	805	814	anti-parallel
Strand 3	B	851	860	anti-parallel
Strand 4	B	832	834	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	795	first strand
Strand 2	B	805	814	anti-parallel
Strand 3	B	1425	1426	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	801	first strand
Strand 2	B	894	904	parallel
Strand 3	B	864	874	anti-parallel
Strand 4	B	820	826	anti-parallel
Strand 5	B	845	846	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	908	918	first strand
Strand 2	B	1308	1318	anti-parallel
Strand 3	B	937	949	anti-parallel
Strand 4	B	1287	1290	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	925	930	first strand
Strand 2	B	1297	1305	anti-parallel
Strand 3	B	1261	1268	anti-parallel
Strand 4	B	1272	1278	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1165	1167	first strand
Strand 2	B	1170	1172	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1327	1334	first strand
Strand 2	B	1346	1355	anti-parallel
Strand 3	B	1413	1421	anti-parallel
Strand 4	B	1375	1377	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1391	1396	first strand
Strand 2	B	1400	1405	anti-parallel
Strand 3	B	1365	1370	anti-parallel
Strand 4	B	1431	1437	anti-parallel
Strand 5	B	1444	1449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q1Y