Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q42

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q42 entry

There are 6 chains in PDB entry 7Q42 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2958	THR 3326
C	THR 2959	THR 3326
E	THR 2959	THR 3326
D	ASP 649	SER 658
B	ASP 649	SER 658
F	ASP 650	ASP 656

There are 33 helices in PDB entry 7Q42. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2986	2991	Right-handed alpha
Helix 2	AA2	A	3020	3023	Right-handed 310
Helix 3	AA3	A	3040	3043	Right-handed 310
Helix 4	AA4	A	3074	3078	Right-handed 310
Helix 5	AA5	A	3094	3097	Right-handed 310
Helix 6	AA6	A	3126	3130	Right-handed 310
Helix 7	AA7	A	3146	3149	Right-handed 310
Helix 8	AA8	A	3180	3184	Right-handed 310
Helix 9	AA9	A	3200	3203	Right-handed 310
Helix 10	AB1	A	3232	3236	Right-handed 310
Helix 11	AB2	A	3252	3255	Right-handed 310
Helix 12	AB3	C	2986	2991	Right-handed alpha
Helix 13	AB4	C	3020	3023	Right-handed 310
Helix 14	AB5	C	3040	3043	Right-handed 310
Helix 15	AB6	C	3074	3078	Right-handed 310
Helix 16	AB7	C	3094	3097	Right-handed 310
Helix 17	AB8	C	3126	3130	Right-handed 310
Helix 18	AB9	C	3146	3149	Right-handed 310
Helix 19	AC1	C	3180	3184	Right-handed 310
Helix 20	AC2	C	3200	3203	Right-handed 310
Helix 21	AC3	C	3232	3236	Right-handed 310
Helix 22	AC4	C	3252	3255	Right-handed 310
Helix 23	AC5	E	2986	2991	Right-handed alpha
Helix 24	AC6	E	3020	3023	Right-handed 310
Helix 25	AC7	E	3040	3043	Right-handed 310
Helix 26	AC8	E	3074	3078	Right-handed 310
Helix 27	AC9	E	3094	3097	Right-handed 310
Helix 28	AD1	E	3126	3130	Right-handed 310
Helix 29	AD2	E	3146	3149	Right-handed 310
Helix 30	AD3	E	3180	3184	Right-handed 310
Helix 31	AD4	E	3200	3203	Right-handed 310
Helix 32	AD5	E	3232	3236	Right-handed 310
Helix 33	AD6	E	3252	3255	Right-handed 310

There are 21 sheets in PDB entry 7Q42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2979	2985	first strand
Strand 2	A	2961	2966	anti-parallel
Strand 3	A	3320	3324	anti-parallel
Strand 4	A	3313	3316	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2994	3000	first strand
Strand 2	A	3003	3008	anti-parallel
Strand 3	A	3013	3018	anti-parallel
Strand 4	A	3032	3038	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3047	3051	first strand
Strand 2	A	3058	3063	anti-parallel
Strand 3	A	3068	3072	anti-parallel
Strand 4	A	3087	3092	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3101	3106	first strand
Strand 2	A	3110	3115	anti-parallel
Strand 3	A	3120	3124	anti-parallel
Strand 4	A	3139	3144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3153	3158	first strand
Strand 2	A	3164	3169	anti-parallel
Strand 3	A	3174	3178	anti-parallel
Strand 4	A	3193	3198	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3207	3212	first strand
Strand 2	A	3216	3221	anti-parallel
Strand 3	A	3226	3230	anti-parallel
Strand 4	A	3245	3250	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3259	3264	first strand
Strand 2	A	3268	3273	anti-parallel
Strand 3	A	3278	3282	anti-parallel
Strand 4	A	3297	3302	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2979	2985	first strand
Strand 2	C	2961	2966	anti-parallel
Strand 3	C	3320	3324	anti-parallel
Strand 4	C	3313	3316	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2994	3000	first strand
Strand 2	C	3003	3008	anti-parallel
Strand 3	C	3013	3018	anti-parallel
Strand 4	C	3032	3038	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3047	3051	first strand
Strand 2	C	3058	3063	anti-parallel
Strand 3	C	3068	3072	anti-parallel
Strand 4	C	3087	3092	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3101	3106	first strand
Strand 2	C	3110	3115	anti-parallel
Strand 3	C	3120	3124	anti-parallel
Strand 4	C	3139	3144	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3153	3158	first strand
Strand 2	C	3164	3169	anti-parallel
Strand 3	C	3174	3178	anti-parallel
Strand 4	C	3193	3198	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3207	3212	first strand
Strand 2	C	3216	3221	anti-parallel
Strand 3	C	3226	3230	anti-parallel
Strand 4	C	3245	3250	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3259	3264	first strand
Strand 2	C	3268	3273	anti-parallel
Strand 3	C	3278	3282	anti-parallel
Strand 4	C	3297	3302	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2979	2985	first strand
Strand 2	E	2960	2966	anti-parallel
Strand 3	E	3320	3325	anti-parallel
Strand 4	E	3313	3316	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2994	3000	first strand
Strand 2	E	3003	3008	anti-parallel
Strand 3	E	3013	3018	anti-parallel
Strand 4	E	3032	3038	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3047	3051	first strand
Strand 2	E	3058	3063	anti-parallel
Strand 3	E	3068	3072	anti-parallel
Strand 4	E	3087	3092	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3101	3106	first strand
Strand 2	E	3110	3115	anti-parallel
Strand 3	E	3120	3124	anti-parallel
Strand 4	E	3139	3144	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3153	3158	first strand
Strand 2	E	3164	3169	anti-parallel
Strand 3	E	3174	3178	anti-parallel
Strand 4	E	3193	3198	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3207	3212	first strand
Strand 2	E	3216	3221	anti-parallel
Strand 3	E	3226	3230	anti-parallel
Strand 4	E	3245	3250	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3259	3264	first strand
Strand 2	E	3268	3273	anti-parallel
Strand 3	E	3278	3282	anti-parallel
Strand 4	E	3297	3302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q42

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q42