Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q4D entry

There are 2 chains in PDB entry 7Q4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1PRO 608
B
 LEU 1PRO 608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 7Q4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
13 45Right-handed alpha
Helix 3
AA3
A
47 77Right-handed alpha
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
85 96Right-handed alpha
Helix 6
AA6
A
98 103Right-handed 310
Helix 7
AA7
A
104 124Right-handed alpha
Helix 8
AA8
A
141 150Right-handed alpha
Helix 9
AA9
A
152 169Right-handed alpha
Helix 10
AB1
A
170 190Right-handed alpha
Helix 11
AB2
A
193 201Right-handed alpha
Helix 12
AB3
A
206 238Right-handed alpha
Helix 13
AB4
A
251 254Right-handed 310
Helix 14
AB5
A
261 263Right-handed 310
Helix 15
AB6
A
264 269Right-handed alpha
Helix 16
AB7
A
279 286Right-handed alpha
Helix 17
AB8
A
289 304Right-handed alpha
Helix 18
AB9
A
310 317Right-handed alpha
Helix 19
AC1
A
352 373Right-handed alpha
Helix 20
AC2
A
376 380Right-handed 310
Helix 21
AC3
A
386 401Right-handed alpha
Helix 22
AC4
A
401 408Right-handed alpha
Helix 23
AC5
A
417 433Right-handed alpha
Helix 24
AC6
A
434 451Right-handed alpha
Helix 25
AC7
A
455 457Right-handed 310
Helix 26
AC8
A
458 471Right-handed alpha
Helix 27
AC9
A
484 489Right-handed 310
Helix 28
AD1
A
498 519Right-handed alpha
Helix 29
AD2
A
524 528Right-handed 310
Helix 30
AD3
A
533 547Right-handed alpha
Helix 31
AD4
A
551 561Right-handed alpha
Helix 32
AD5
A
567 574Right-handed alpha
Helix 33
AD6
A
574 589Right-handed alpha
Helix 34
AD7
B
2 6Right-handed 310
Helix 35
AD8
B
13 45Right-handed alpha
Helix 36
AD9
B
47 77Right-handed alpha
Helix 37
AE1
B
79 83Right-handed 310
Helix 38
AE2
B
85 96Right-handed alpha
Helix 39
AE3
B
98 103Right-handed 310
Helix 40
AE4
B
104 124Right-handed alpha
Helix 41
AE5
B
141 150Right-handed alpha
Helix 42
AE6
B
152 169Right-handed alpha
Helix 43
AE7
B
170 190Right-handed alpha
Helix 44
AE8
B
193 201Right-handed alpha
Helix 45
AE9
B
206 238Right-handed alpha
Helix 46
AF1
B
261 263Right-handed 310
Helix 47
AF2
B
264 269Right-handed alpha
Helix 48
AF3
B
279 286Right-handed alpha
Helix 49
AF4
B
289 304Right-handed alpha
Helix 50
AF5
B
310 317Right-handed alpha
Helix 51
AF6
B
352 373Right-handed alpha
Helix 52
AF7
B
376 380Right-handed 310
Helix 53
AF8
B
386 401Right-handed alpha
Helix 54
AF9
B
401 408Right-handed alpha
Helix 55
AG1
B
417 433Right-handed alpha
Helix 56
AG2
B
434 451Right-handed alpha
Helix 57
AG3
B
455 457Right-handed 310
Helix 58
AG4
B
458 471Right-handed alpha
Helix 59
AG5
B
484 489Right-handed 310
Helix 60
AG6
B
498 519Right-handed alpha
Helix 61
AG7
B
524 528Right-handed 310
Helix 62
AG8
B
533 545Right-handed alpha
Helix 63
AG9
B
551 561Right-handed alpha
Helix 64
AH1
B
567 574Right-handed alpha
Helix 65
AH2
B
574 589Right-handed alpha
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There are 4 sheets in PDB entry 7Q4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
473 474parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
343 346anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 249first strand
Strand 2
B
473 474parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 336first strand
Strand 2
B
343 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il