Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q4F entry

There are 3 chains in PDB entry 7Q4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	GLY 235
B	ASN 6	GLY 235
C	ASN 6	ASN 171

There are 40 helices in PDB entry 7Q4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	33	51	Right-handed alpha
Helix 3	AA3	A	78	93	Right-handed alpha
Helix 4	AA4	A	93	98	Right-handed alpha
Helix 5	AA5	A	147	161	Right-handed alpha
Helix 6	AA6	A	191	203	Right-handed alpha
Helix 7	AA7	A	204	209	Right-handed 310
Helix 8	AA8	A	225	231	Right-handed alpha
Helix 9	AA9	B	7	13	Right-handed alpha
Helix 10	AB1	B	33	51	Right-handed alpha
Helix 11	AB2	B	78	93	Right-handed alpha
Helix 12	AB3	B	93	98	Right-handed alpha
Helix 13	AB4	B	147	161	Right-handed alpha
Helix 14	AB5	B	191	203	Right-handed alpha
Helix 15	AB6	B	204	209	Right-handed 310
Helix 16	AB7	B	225	231	Right-handed alpha
Helix 17	AB8	C	7	13	Right-handed alpha
Helix 18	AB9	C	33	51	Right-handed alpha
Helix 19	AC1	C	78	93	Right-handed alpha
Helix 20	AC2	C	93	98	Right-handed alpha
Helix 21	AC3	C	147	161	Right-handed alpha
Helix 22	AC4	C	191	203	Right-handed alpha
Helix 23	AC5	C	204	209	Right-handed 310
Helix 24	AC6	C	225	231	Right-handed alpha
Helix 25	AC7	D	7	12	Right-handed alpha
Helix 26	AC8	D	33	51	Right-handed alpha
Helix 27	AC9	D	78	93	Right-handed alpha
Helix 28	AD1	D	93	98	Right-handed alpha
Helix 29	AD2	D	147	161	Right-handed alpha
Helix 30	AD3	D	191	203	Right-handed alpha
Helix 31	AD4	D	204	209	Right-handed 310
Helix 32	AD5	D	225	233	Right-handed alpha
Helix 33	AD6	E	7	13	Right-handed alpha
Helix 34	AD7	E	33	51	Right-handed alpha
Helix 35	AD8	E	78	93	Right-handed alpha
Helix 36	AD9	E	93	98	Right-handed alpha
Helix 37	AE1	E	147	162	Right-handed alpha
Helix 38	AE2	E	191	203	Right-handed alpha
Helix 39	AE3	E	205	209	Right-handed 310
Helix 40	AE4	E	225	231	Right-handed alpha

There are 10 sheets in PDB entry 7Q4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	108	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	53	60	anti-parallel
Strand 5	A	218	222	anti-parallel
Strand 6	A	131	139	anti-parallel
Strand 7	A	183	189	anti-parallel
Strand 8	A	169	174	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	108	first strand
Strand 2	A	16	24	anti-parallel
Strand 3	A	70	76	anti-parallel
Strand 4	A	53	60	anti-parallel
Strand 5	A	218	222	anti-parallel
Strand 6	A	131	139	anti-parallel
Strand 7	A	211	213	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	108	first strand
Strand 2	B	16	24	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	218	222	anti-parallel
Strand 6	B	131	139	anti-parallel
Strand 7	B	183	189	anti-parallel
Strand 8	B	169	174	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	108	first strand
Strand 2	B	16	24	anti-parallel
Strand 3	B	70	76	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	218	222	anti-parallel
Strand 6	B	131	139	anti-parallel
Strand 7	B	211	213	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	108	first strand
Strand 2	C	16	24	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	54	60	anti-parallel
Strand 5	C	218	223	anti-parallel
Strand 6	C	131	139	anti-parallel
Strand 7	C	183	189	anti-parallel
Strand 8	C	169	174	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	108	first strand
Strand 2	C	16	24	anti-parallel
Strand 3	C	70	76	anti-parallel
Strand 4	C	54	60	anti-parallel
Strand 5	C	218	223	anti-parallel
Strand 6	C	131	139	anti-parallel
Strand 7	C	211	213	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	108	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	70	76	anti-parallel
Strand 4	D	53	60	anti-parallel
Strand 5	D	218	223	anti-parallel
Strand 6	D	131	139	anti-parallel
Strand 7	D	183	189	anti-parallel
Strand 8	D	169	174	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	108	first strand
Strand 2	D	16	24	anti-parallel
Strand 3	D	70	76	anti-parallel
Strand 4	D	53	60	anti-parallel
Strand 5	D	218	223	anti-parallel
Strand 6	D	131	139	anti-parallel
Strand 7	D	211	213	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	108	first strand
Strand 2	E	16	24	anti-parallel
Strand 3	E	70	76	anti-parallel
Strand 4	E	53	60	anti-parallel
Strand 5	E	218	222	anti-parallel
Strand 6	E	131	139	anti-parallel
Strand 7	E	183	189	anti-parallel
Strand 8	E	169	174	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	108	first strand
Strand 2	E	16	24	anti-parallel
Strand 3	E	70	76	anti-parallel
Strand 4	E	53	60	anti-parallel
Strand 5	E	218	222	anti-parallel
Strand 6	E	131	139	anti-parallel
Strand 7	E	211	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4F