Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q4J entry

There are 25 chains in PDB entry 7Q4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLY 11
A
 THR 13LEU 93
A
 PHE 95VAL 96
A
 GLU 98TYR 126
A
 ASP 128HIS 169
A
 LEU 171LYS 193
A
 VAL 195TYR 208
A
 VAL 210PHE 235
A
 SER 237GLU 241
A
 ALA 244PHE 252
A
 LYS 254GLY 259
B
 MSE 1GLN 2
B
 ALA 4VAL 24
B
 GLY 26GLU 56
B
 VAL 58LEU 93
B
 PHE 95TYR 126
B
 ASP 128ILE 130
B
 ALA 132VAL 151
B
 GLN 153HIS 169
B
 LEU 171ASP 192
B
 VAL 195TYR 208
B
 VAL 210PHE 235
B
 SER 237LYS 242
B
 ALA 244PHE 252
B
 GLU 255GLY 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7Q4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 45Right-handed 310
Helix 2
AA2
A
46 58Right-handed alpha
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
81 98Right-handed alpha
Helix 5
AA5
A
113 126Right-handed alpha
Helix 6
AA6
A
141 150Right-handed alpha
Helix 7
AA7
A
152 162Right-handed alpha
Helix 8
AA8
A
173 181Right-handed alpha
Helix 9
AA9
A
183 189Right-handed alpha
Helix 10
AB1
A
208 218Right-handed alpha
Helix 11
AB2
A
237 258Right-handed alpha
Helix 12
AB3
B
43 45Right-handed 310
Helix 13
AB4
B
46 58Right-handed alpha
Helix 14
AB5
B
76 80Right-handed 310
Helix 15
AB6
B
81 98Right-handed alpha
Helix 16
AB7
B
113 126Right-handed alpha
Helix 17
AB8
B
141 149Right-handed alpha
Helix 18
AB9
B
152 162Right-handed alpha
Helix 19
AC1
B
173 180Right-handed alpha
Helix 20
AC2
B
183 189Right-handed alpha
Helix 21
AC3
B
208 218Right-handed alpha
Helix 22
AC4
B
237 257Right-handed alpha
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There are 4 sheets in PDB entry 7Q4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
12 19anti-parallel
Strand 3
A
61 65anti-parallel
Strand 4
A
28 34parallel
Strand 5
A
102 112parallel
Strand 6
A
132 136parallel
Strand 7
A
194 200parallel
Strand 8
A
223 228parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
170 172anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 9first strand
Strand 2
B
12 19anti-parallel
Strand 3
B
61 65anti-parallel
Strand 4
B
28 34parallel
Strand 5
B
102 112parallel
Strand 6
B
132 136parallel
Strand 7
B
194 200parallel
Strand 8
B
223 228parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
170 172anti-parallel
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