Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q4P entry

There are 18 chains in PDB entry 7Q4P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	PRO 44	ASN 81
2	U 8	C 9
2	C 12	A 24
2	A 26	U 27
2	A 35	G 36
2	A 38	A 38
2	G 42	G 42
2	C 45	U 46
2	A 48	U 53
2	U 55	A 57
2	A 59	U 60
2	U 62	A 64
9	ILE 392	TYR 492
A	SER 1051	LEU 1304
B	ASN 458	GLU 712
C	MET 1	PHE 1217
E	TYR 18	ASP 81
G	LEU 8	ASN 90

There are 51 helices in PDB entry 7Q4P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	65	75	Right-handed alpha
Helix 2	AA2	1	75	81	Right-handed alpha
Helix 3	AA3	9	393	400	Right-handed alpha
Helix 4	AA4	9	418	426	Right-handed alpha
Helix 5	AA5	9	428	439	Right-handed alpha
Helix 6	AA6	9	443	447	Right-handed 310
Helix 7	AA7	9	451	468	Right-handed alpha
Helix 8	AA8	A	1052	1063	Right-handed alpha
Helix 9	AA9	A	1064	1068	Right-handed 310
Helix 10	AB1	A	1070	1088	Right-handed alpha
Helix 11	AB2	A	1089	1099	Right-handed alpha
Helix 12	AB3	A	1100	1102	Right-handed 310
Helix 13	AB4	A	1105	1123	Right-handed alpha
Helix 14	AB5	A	1124	1135	Right-handed alpha
Helix 15	AB6	A	1140	1159	Right-handed alpha
Helix 16	AB7	A	1160	1164	Right-handed 310
Helix 17	AB8	A	1165	1178	Right-handed alpha
Helix 18	AB9	A	1181	1199	Right-handed alpha
Helix 19	AC1	A	1204	1216	Right-handed alpha
Helix 20	AC2	A	1217	1221	Right-handed 310
Helix 21	AC3	A	1223	1242	Right-handed alpha
Helix 22	AC4	A	1242	1251	Right-handed alpha
Helix 23	AC5	A	1252	1254	Right-handed 310
Helix 24	AC6	A	1258	1277	Right-handed alpha
Helix 25	AC7	A	1279	1284	Right-handed alpha
Helix 26	AC8	A	1297	1302	Right-handed 310
Helix 27	AC9	B	461	469	Right-handed alpha
Helix 28	AD1	B	477	482	Right-handed 310
Helix 29	AD2	B	484	494	Right-handed alpha
Helix 30	AD3	B	501	505	Right-handed 310
Helix 31	AD4	B	525	530	Right-handed alpha
Helix 32	AD5	B	568	577	Right-handed alpha
Helix 33	AD6	C	198	203	Right-handed alpha
Helix 34	AD7	C	429	432	Right-handed 310
Helix 35	AD8	C	808	826	Right-handed alpha
Helix 36	AD9	C	834	845	Right-handed alpha
Helix 37	AE1	C	848	853	Right-handed alpha
Helix 38	AE2	C	1073	1078	Right-handed alpha
Helix 39	AE3	C	1134	1152	Right-handed alpha
Helix 40	AE4	C	1159	1165	Right-handed alpha
Helix 41	AE5	C	1176	1180	Right-handed alpha
Helix 42	AE6	C	1181	1185	Right-handed 310
Helix 43	AE7	C	1186	1197	Right-handed alpha
Helix 44	AE8	C	1200	1216	Right-handed alpha
Helix 45	AE9	E	27	46	Right-handed alpha
Helix 46	AF1	E	46	58	Right-handed alpha
Helix 47	AF2	E	60	72	Right-handed alpha
Helix 48	AF3	G	46	50	Right-handed 310
Helix 49	AF4	G	51	55	Right-handed 310
Helix 50	AF5	G	73	78	Right-handed alpha
Helix 51	AF6	G	79	83	Right-handed 310

There are 22 sheets in PDB entry 7Q4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	46	48	first strand
Strand 2	1	54	56	anti-parallel
Strand 3	1	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	405	408	first strand
Strand 2	9	414	417	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	479	480	first strand
Strand 2	9	486	487	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1101	1107	first strand
Strand 2	C	1116	1121	anti-parallel
Strand 3	C	1126	1131	anti-parallel
Strand 4	C	3	9	anti-parallel
Strand 5	C	1173	1175	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	20	first strand
Strand 2	C	29	33	anti-parallel
Strand 3	C	37	43	anti-parallel
Strand 4	C	50	57	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	68	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	98	106	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	129	133	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	152	154	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	123	first strand
Strand 2	C	129	133	anti-parallel
Strand 3	C	139	146	anti-parallel
Strand 4	C	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	173	first strand
Strand 2	C	181	188	anti-parallel
Strand 3	C	207	214	anti-parallel
Strand 4	C	219	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	237	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	255	259	anti-parallel
Strand 4	C	267	270	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	386	387	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	294	first strand
Strand 2	C	299	305	anti-parallel
Strand 3	C	309	318	anti-parallel
Strand 4	C	321	332	anti-parallel
Strand 5	C	373	374	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	342	first strand
Strand 2	C	346	351	anti-parallel
Strand 3	C	356	361	anti-parallel
Strand 4	C	395	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	413	first strand
Strand 2	C	422	427	anti-parallel
Strand 3	C	434	440	anti-parallel
Strand 4	C	774	780	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	785	790	first strand
Strand 2	C	797	804	anti-parallel
Strand 3	C	862	869	anti-parallel
Strand 4	C	876	881	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	886	895	first strand
Strand 2	C	903	911	anti-parallel
Strand 3	C	923	931	anti-parallel
Strand 4	C	936	945	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	949	955	first strand
Strand 2	C	958	963	anti-parallel
Strand 3	C	966	971	anti-parallel
Strand 4	C	978	983	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	990	996	first strand
Strand 2	C	999	1004	anti-parallel
Strand 3	C	1009	1015	anti-parallel
Strand 4	C	1020	1026	anti-parallel
Strand 5	C	1087	1088	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1038	first strand
Strand 2	C	1043	1048	anti-parallel
Strand 3	C	1052	1057	anti-parallel
Strand 4	C	1090	1096	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	19	first strand
Strand 2	G	44	45	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	22	first strand
Strand 2	G	67	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	42	first strand
Strand 2	G	70	72	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q4P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q4P