Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q50 entry

There are 2 chains in PDB entry 7Q50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 121PRO 290
B
 PHE 1MET 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7Q50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
194 203Right-handed alpha
Helix 2
AA2
A
208 215Right-handed alpha
Helix 3
AA3
A
221 227Right-handed alpha
Helix 4
AA4
A
251 255Right-handed 310
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There is 1 sheet ( A) in PDB entry 7Q50.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
268 274anti-parallel
Strand 3
A
282 288anti-parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
138 146anti-parallel
Strand 6
A
154 162anti-parallel
Strand 7
A
170 178anti-parallel
Strand 8
A
231 240anti-parallel
Strand 9
A
257 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il