Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q5B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q5B entry

There are 13 chains in PDB entry 7Q5B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	G -27	A 28
S	G 19	A 49
r	T -8	A 25
s	T 7	G 15
A	SER 17	PRO 437
B	SER 17	ALA 504
C	TYR 18	GLU 511
D	SER 17	GLN 363
X	THR 421	LYS 490
Y	SER 61	MET 240
Z	SER 71	GLU 497
t	G 1	C 19
u	G 1	C 19

There are 87 helices in PDB entry 7Q5B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	38	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	81	83	Right-handed 310
Helix 4	AA4	A	84	92	Right-handed alpha
Helix 5	AA5	A	103	112	Right-handed alpha
Helix 6	AA6	A	119	129	Right-handed alpha
Helix 7	AA7	A	131	138	Right-handed alpha
Helix 8	AA8	A	204	214	Right-handed alpha
Helix 9	AA9	A	227	232	Right-handed alpha
Helix 10	AB1	A	232	243	Right-handed alpha
Helix 11	AB2	A	253	257	Right-handed 310
Helix 12	AB3	A	258	275	Right-handed alpha
Helix 13	AB4	A	281	296	Right-handed alpha
Helix 14	AB5	A	304	309	Right-handed alpha
Helix 15	AB6	A	334	362	Right-handed alpha
Helix 16	AB7	A	428	430	Right-handed 310
Helix 17	AB8	B	29	38	Right-handed alpha
Helix 18	AB9	B	47	60	Right-handed alpha
Helix 19	AC1	B	81	83	Right-handed 310
Helix 20	AC2	B	84	94	Right-handed alpha
Helix 21	AC3	B	95	98	Right-handed 310
Helix 22	AC4	B	103	112	Right-handed alpha
Helix 23	AC5	B	119	131	Right-handed alpha
Helix 24	AC6	B	133	138	Right-handed alpha
Helix 25	AC7	B	141	145	Right-handed 310
Helix 26	AC8	B	205	215	Right-handed alpha
Helix 27	AC9	B	232	242	Right-handed alpha
Helix 28	AD1	B	253	256	Right-handed 310
Helix 29	AD2	B	257	275	Right-handed alpha
Helix 30	AD3	B	284	296	Right-handed alpha
Helix 31	AD4	B	304	311	Right-handed alpha
Helix 32	AD5	B	324	328	Right-handed 310
Helix 33	AD6	B	334	362	Right-handed alpha
Helix 34	AD7	B	449	454	Right-handed alpha
Helix 35	AD8	B	487	491	Right-handed 310
Helix 36	AD9	B	499	504	Right-handed alpha
Helix 37	AE1	C	28	34	Right-handed alpha
Helix 38	AE2	C	47	60	Right-handed alpha
Helix 39	AE3	C	84	94	Right-handed alpha
Helix 40	AE4	C	103	112	Right-handed alpha
Helix 41	AE5	C	119	132	Right-handed alpha
Helix 42	AE6	C	204	213	Right-handed alpha
Helix 43	AE7	C	233	242	Right-handed alpha
Helix 44	AE8	C	258	275	Right-handed alpha
Helix 45	AE9	C	285	296	Right-handed alpha
Helix 46	AF1	C	304	309	Right-handed alpha
Helix 47	AF2	C	329	340	Right-handed alpha
Helix 48	AF3	C	341	352	Right-handed alpha
Helix 49	AF4	C	426	428	Right-handed 310
Helix 50	AF5	C	447	454	Right-handed alpha
Helix 51	AF6	C	496	511	Right-handed alpha
Helix 52	AF7	D	28	34	Right-handed alpha
Helix 53	AF8	D	47	60	Right-handed alpha
Helix 54	AF9	D	84	94	Right-handed alpha
Helix 55	AG1	D	95	98	Right-handed 310
Helix 56	AG2	D	103	112	Right-handed alpha
Helix 57	AG3	D	119	131	Right-handed alpha
Helix 58	AG4	D	204	214	Right-handed alpha
Helix 59	AG5	D	233	242	Right-handed alpha
Helix 60	AG6	D	258	275	Right-handed alpha
Helix 61	AG7	D	285	295	Right-handed alpha
Helix 62	AG8	D	304	310	Right-handed alpha
Helix 63	AG9	D	334	363	Right-handed alpha
Helix 64	AH1	X	422	435	Right-handed alpha
Helix 65	AH2	X	438	446	Right-handed alpha
Helix 66	AH3	X	450	465	Right-handed alpha
Helix 67	AH4	X	465	476	Right-handed alpha
Helix 68	AH5	X	481	489	Right-handed alpha
Helix 69	AH6	Y	82	88	Right-handed alpha
Helix 70	AH7	Y	128	147	Right-handed alpha
Helix 71	AH8	Y	172	179	Right-handed alpha
Helix 72	AH9	Y	220	237	Right-handed alpha
Helix 73	AI1	Z	72	95	Right-handed alpha
Helix 74	AI2	Z	97	114	Right-handed alpha
Helix 75	AI3	Z	121	137	Right-handed alpha
Helix 76	AI4	Z	142	147	Right-handed alpha
Helix 77	AI5	Z	153	169	Right-handed alpha
Helix 78	AI6	Z	178	186	Right-handed alpha
Helix 79	AI7	Z	196	211	Right-handed alpha
Helix 80	AI8	Z	219	235	Right-handed alpha
Helix 81	AI9	Z	241	247	Right-handed 310
Helix 82	AJ1	Z	251	266	Right-handed alpha
Helix 83	AJ2	Z	287	294	Right-handed alpha
Helix 84	AJ3	Z	448	455	Right-handed alpha
Helix 85	AJ4	Z	476	478	Right-handed 310
Helix 86	AJ5	Z	479	491	Right-handed alpha
Helix 87	AJ6	Z	492	497	Right-handed alpha

There are 13 sheets in PDB entry 7Q5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	71	73	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	178	184	anti-parallel
Strand 3	A	160	165	anti-parallel
Strand 4	A	221	224	parallel
Strand 5	A	245	246	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	407	first strand
Strand 2	A	410	413	anti-parallel
Strand 3	A	424	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	73	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	180	183	anti-parallel
Strand 3	B	191	193	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	410	413	anti-parallel
Strand 3	B	400	407	anti-parallel
Strand 4	B	375	377	anti-parallel
Strand 5	B	431	432	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	464	first strand
Strand 2	B	471	475	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	180	184	anti-parallel
Strand 3	C	160	164	anti-parallel
Strand 4	C	221	222	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	425	first strand
Strand 2	C	410	413	anti-parallel
Strand 3	C	399	407	anti-parallel
Strand 4	C	375	378	anti-parallel
Strand 5	C	430	431	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	464	first strand
Strand 2	C	471	475	anti-parallel
Strand 3	C	484	486	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	68	first strand
Strand 2	D	71	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	190	195	first strand
Strand 2	D	178	183	anti-parallel
Strand 3	D	160	164	anti-parallel
Strand 4	D	221	222	parallel
Strand 5	D	247	248	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	92	93	first strand
Strand 2	Y	102	104	anti-parallel
Strand 3	Y	114	115	anti-parallel
Strand 4	Y	120	126	anti-parallel
Strand 5	Y	66	75	anti-parallel
Strand 6	Y	156	165	anti-parallel
Strand 7	Y	211	215	anti-parallel
Strand 8	Y	203	206	anti-parallel
Strand 9	Y	190	196	anti-parallel
Strand 10	Y	183	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q5B

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q5B