Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7Q62 entry

There are 2 chains in PDB entry 7Q62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 19	PRO 1321
B	GLU 19	PRO 905

There are 25 helices in PDB entry 7Q62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	406	409	Right-handed 310
Helix 2	AA2	A	597	602	Right-handed alpha
Helix 3	AA3	A	608	615	Right-handed alpha
Helix 4	AA4	A	670	679	Right-handed alpha
Helix 5	AA5	A	956	963	Right-handed alpha
Helix 6	AA6	A	972	979	Right-handed alpha
Helix 7	AA7	A	979	990	Right-handed alpha
Helix 8	AA8	A	995	1010	Right-handed alpha
Helix 9	AA9	A	1011	1014	Right-handed 310
Helix 10	AB1	A	1034	1047	Right-handed alpha
Helix 11	AB2	A	1056	1070	Right-handed alpha
Helix 12	AB3	A	1093	1104	Right-handed alpha
Helix 13	AB4	A	1105	1109	Right-handed 310
Helix 14	AB5	A	1114	1129	Right-handed alpha
Helix 15	AB6	A	1133	1148	Right-handed alpha
Helix 16	AB7	A	1153	1162	Right-handed alpha
Helix 17	AB8	A	1192	1207	Right-handed alpha
Helix 18	AB9	A	1211	1227	Right-handed alpha
Helix 19	AC1	A	1239	1255	Right-handed alpha
Helix 20	AC2	B	478	481	Right-handed 310
Helix 21	AC3	B	508	512	Right-handed 310
Helix 22	AC4	B	596	602	Right-handed alpha
Helix 23	AC5	B	608	614	Right-handed alpha
Helix 24	AC6	B	624	628	Right-handed 310
Helix 25	AC7	B	670	677	Right-handed alpha

There are 34 sheets in PDB entry 7Q62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	82	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	23	28	anti-parallel
Strand 4	A	680	684	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	107	116	parallel
Strand 3	A	91	101	anti-parallel
Strand 4	A	51	57	anti-parallel
Strand 5	A	62	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	126	first strand
Strand 2	A	136	144	anti-parallel
Strand 3	A	180	186	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	206	211	parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	155	161	anti-parallel
Strand 5	A	167	174	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	235	244	anti-parallel
Strand 3	A	291	297	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	285	first strand
Strand 2	A	253	260	anti-parallel
Strand 3	A	311	319	anti-parallel
Strand 4	A	326	334	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	346	first strand
Strand 2	A	356	365	anti-parallel
Strand 3	A	398	404	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	438	444	parallel
Strand 3	A	413	418	anti-parallel
Strand 4	A	375	381	anti-parallel
Strand 5	A	387	392	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	468	476	anti-parallel
Strand 3	A	516	522	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	507	first strand
Strand 2	A	487	495	anti-parallel
Strand 3	A	533	539	anti-parallel
Strand 4	A	545	551	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	567	first strand
Strand 2	A	576	582	anti-parallel
Strand 3	A	749	755	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	743	first strand
Strand 2	A	588	595	anti-parallel
Strand 3	A	762	770	anti-parallel
Strand 4	A	776	778	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	741	743	first strand
Strand 2	A	588	595	anti-parallel
Strand 3	A	762	770	anti-parallel
Strand 4	A	782	785	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	795	first strand
Strand 2	A	806	814	anti-parallel
Strand 3	A	850	860	anti-parallel
Strand 4	A	832	833	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	801	first strand
Strand 2	A	894	904	parallel
Strand 3	A	864	874	anti-parallel
Strand 4	A	820	826	anti-parallel
Strand 5	A	842	846	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	918	first strand
Strand 2	A	1308	1318	anti-parallel
Strand 3	A	943	949	anti-parallel
Strand 4	A	1287	1290	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	921	930	first strand
Strand 2	A	1297	1305	anti-parallel
Strand 3	A	1261	1267	anti-parallel
Strand 4	A	1273	1278	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1164	1165	first strand
Strand 2	A	1172	1173	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	82	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	23	28	anti-parallel
Strand 4	B	680	684	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	105	116	parallel
Strand 3	B	91	102	anti-parallel
Strand 4	B	51	57	anti-parallel
Strand 5	B	62	69	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	126	first strand
Strand 2	B	136	144	anti-parallel
Strand 3	B	180	186	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	206	211	parallel
Strand 3	B	194	200	anti-parallel
Strand 4	B	155	162	anti-parallel
Strand 5	B	166	174	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	223	first strand
Strand 2	B	235	244	anti-parallel
Strand 3	B	291	297	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	326	336	parallel
Strand 3	B	308	320	anti-parallel
Strand 4	B	252	262	anti-parallel
Strand 5	B	278	285	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	346	first strand
Strand 2	B	357	365	anti-parallel
Strand 3	B	398	403	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	438	444	parallel
Strand 3	B	413	418	anti-parallel
Strand 4	B	375	381	anti-parallel
Strand 5	B	387	392	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	467	476	anti-parallel
Strand 3	B	516	523	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	507	first strand
Strand 2	B	487	495	anti-parallel
Strand 3	B	533	539	anti-parallel
Strand 4	B	545	551	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	567	first strand
Strand 2	B	576	582	anti-parallel
Strand 3	B	749	755	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	743	first strand
Strand 2	B	588	589	anti-parallel
Strand 3	B	768	771	anti-parallel
Strand 4	B	775	778	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	595	first strand
Strand 2	B	761	766	anti-parallel
Strand 3	B	782	786	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	730	first strand
Strand 2	B	894	904	parallel
Strand 3	B	799	801	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	730	first strand
Strand 2	B	894	904	parallel
Strand 3	B	864	874	anti-parallel
Strand 4	B	820	826	anti-parallel
Strand 5	B	844	846	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	795	first strand
Strand 2	B	805	814	anti-parallel
Strand 3	B	850	860	anti-parallel
Strand 4	B	832	834	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7Q62

Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q62