Analysis of interatomic Contacts of Structural Units in PDB entry:
7Q6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7Q6D entry

There is 1 chain in PDB entry 7Q6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6GLU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7Q6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 73Right-handed alpha
Helix 2
AA2
A
105 118Right-handed alpha
Helix 3
AA3
A
168 178Right-handed alpha
Helix 4
AA4
A
188 197Right-handed alpha
Helix 5
AA5
A
198 205Right-handed alpha
Helix 6
AA6
A
235 248Right-handed alpha
Helix 7
AA7
A
250 262Right-handed alpha
Helix 8
AA8
A
265 269Right-handed 310
Helix 9
AA9
A
290 322Right-handed alpha
Helix 10
AB1
A
336 341Right-handed 310
Helix 11
AB2
A
343 353Right-handed alpha
Helix 12
AB3
A
367 372Right-handed alpha
Helix 13
AB4
A
373 375Right-handed 310
Helix 14
AB5
A
376 387Right-handed alpha
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There are 4 sheets in PDB entry 7Q6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 187first strand
Strand 2
A
78 83parallel
Strand 3
A
9 15parallel
Strand 4
A
20 27anti-parallel
Strand 5
A
33 41anti-parallel
Strand 6
A
364 366parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 98first strand
Strand 2
A
153 164anti-parallel
Strand 3
A
125 137anti-parallel
Strand 4
A
140 143anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 232first strand
Strand 2
A
216 222anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
A
331 335parallel
Strand 5
A
356 358parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
285 289anti-parallel
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